YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16761141
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.93
Non-Cytoplasmic	44	50	0.72
Transmembrane Helix	51	73	0.82
Cytoplasmic	74	101	0.85
Transmembrane Helix	102	122	0.89
Non-Cytoplasmic	123	129	0.79
Transmembrane Helix	130	149	0.94
Cytoplasmic	150	158	0.86
Transmembrane Helix	159	182	0.90
Non-Cytoplasmic	183	199	0.90
Transmembrane Helix	200	221	0.88
Cytoplasmic	222	244	0.89
Transmembrane Helix	245	266	0.92
Non-Cytoplasmic	267	290	0.92
Transmembrane Helix	291	312	0.91
Cytoplasmic	313	346	0.90
Transmembrane Helix	347	365	0.95
Non-Cytoplasmic	366	371	0.76
Transmembrane Helix	372	394	0.89
Cytoplasmic	395	414	0.89
Transmembrane Helix	415	434	0.95
Non-Cytoplasmic	435	449	0.79
Transmembrane Helix	450	467	0.96
Cytoplasmic	468	489	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKTKTTEA PALRRELKAR HLTMIAIGGS IGTGLFVASG ATISLAGPGG ALFSYILIGL  60
   61 MVYFLMTSLG ELAAYMPVSG SFATYGQNYV EEGFGFALGW NYWYNWAVTI AVDLVAAQLV 120
  121 MGWWFPDTPG WIWSALFLCV IFLLNYISVR GFGEAEYWFS LIKVATVIIF IIVGVAMIIG 180
  181 IFKGVEPVGW SNWTTGDAPF AGGFAAMIGV AMIVGFSFQG TELIGIAAGE SENPEKNIPR 240
  241 AVRQVFWRIL LFYVFAILII SLIIPYTDPN LLRNDVKDIS VSPFTLVFQH AGLLSAAAIM 300
  301 NAVILTAVLS AGNSGMYAST RMLYTLACDG KAPRIFAKLS RGGVPRNALY ATTVIAGLCF 360
  361 LTSMFGNQTV YLWLLNTSGM TGFIAWLGIA ISHYRFRRGY VLQGYDVNDL PYRSGFFPLG 420
  421 PIFAFVLCLI ITLGQNYEAF LKDTIDWGGV AATYIGIPLF LLIWFGYKLI KGTHFVRYSE 480
  481 MHFPERVKK