YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16502248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.86
Transmembrane Helix	16	35	0.92
Non-Cytoplasmic	36	39	0.76
Transmembrane Helix	40	56	0.82
Cytoplasmic	57	63	0.75
Transmembrane Helix	64	84	0.81
Non-Cytoplasmic	85	88	0.63
Transmembrane Helix	89	108	0.85
Cytoplasmic	109	113	0.72
Transmembrane Helix	114	133	0.93
Non-Cytoplasmic	134	140	0.72
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	388	0.91
Transmembrane Helix	389	408	0.85
Non-Cytoplasmic	409	414	0.58
Transmembrane Helix	415	432	0.69
Cytoplasmic	433	438	0.71
Transmembrane Helix	439	459	0.87
Non-Cytoplasmic	460	481	0.57
Transmembrane Helix	482	503	0.86
Cytoplasmic	504	512	0.57
Transmembrane Helix	513	534	0.90
Non-Cytoplasmic	535	717	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPLIRRYT WNSTWLYYIR IFIALCGTTA LPWWLGDVKL TIPLTLGMVA AALTDLDDRL  60
   61 AGRLRNLIIT LICFFIASAS VELLFPWPWL FALGLTLSTS GFILLGGLGQ RYATIAFGAL 120
  121 LIAIYTMLGA SLYDHWYQQP LLLLAGAVWY NLLTLTGHLL FPIRPLQDNL ARSYEQLAHY 180
  181 LELKSRLFDP DIEDESQAPL YDLALANGQL MATLNQTKVS LLTRLRGDRG QRGTRRTLHY 240
  241 YFVAQDIHER ASSSHIQYQT LRDYFRHSDV MFRFQRLMSM QAQACTQLAR CILLRTPYQH 300
  301 DPRFERVFTH IDAALERMRA SGASLELLNT LGFLLTNLRA IDAQLATIES EQAQAMPRNE 360
  361 SENQLADDSL HGFSDIWLRL SRNFTPESAL FRHAVRMSLV LCIGYALIQI TGMRHGYWIL 420
  421 LTSLFVCQPN YNATRHRLAL RIIGTLVGVA IGLPILWFVP SLEGQLVLLV ITGVLFFAFR 480
  481 NVQYAHATMF ITLLVLLCFN LLGEGFEVAL PRVIDTLIGC AIAWAAVSFI WPDWRFRNLP 540
  541 RVLQRATDAN CRYLDAILEQ YHQGRDNRLA YRIARRDAHN RDAELASVVS NMSSEPDVTA 600
  601 ETREAAFRLL CLNHTFTSYI SALGAHREKL SNPDVLGLLD DAVCYVDDAL HHQPEDEQRV 660
  661 HQALEGLKQR VQSLETRPDS KEPLVVQQIG LLIALLPEIG RLQRQISPPT STLITQP