YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16759535
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.97
Transmembrane Helix	32	53	0.89
Non-Cytoplasmic	54	58	0.68
Transmembrane Helix	59	78	0.90
Cytoplasmic	79	97	0.90
Transmembrane Helix	98	121	0.77
Non-Cytoplasmic	122	138	0.77
Transmembrane Helix	139	158	0.95
Cytoplasmic	159	167	0.81
Transmembrane Helix	168	188	0.95
Non-Cytoplasmic	189	210	0.90
Transmembrane Helix	211	234	0.91
Cytoplasmic	235	252	0.94
Transmembrane Helix	253	275	0.92
Non-Cytoplasmic	276	294	0.94
Transmembrane Helix	295	316	0.92
Cytoplasmic	317	343	0.94
Transmembrane Helix	344	365	0.92
Non-Cytoplasmic	366	372	0.75
Transmembrane Helix	373	394	0.92
Cytoplasmic	395	410	0.94
Transmembrane Helix	411	433	0.91
Non-Cytoplasmic	434	439	0.83
Transmembrane Helix	440	459	0.95
Cytoplasmic	460	464	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNASTASGA SVSDAASKNE PTLQRGLQNR HIQLIALGGA IGTGLFLGIG PAIQMAGPAV  60
   61 LLGYGVAGII AFLIMRQLGE MVVEEPVSGS FAHFAWKYWG PFAGFLSGWN YWVMFVLVGM 120
  121 AELTAAGIYM QYWLPDVPTW VWAAVFFIII NAVNLVNVRL YGETEFWFAL IKVLAIIGMI 180
  181 GFGLWLLFSG HGGEHASIDN LWRYNGFFAT GWHGLLLSLA VIMFSFGGLE LIGITAAEAR 240
  241 DPQKSIPKAV NQVVYRILLF YIGSLVVLLA LYPWVEVKSN SSPFVMIFHN LDSNVVASAL 300
  301 NFVILVASLS VYNSGVYSNS RMLFGLSVQG NAPKFLTRVS HRGVPVNSLM LSGAITSLVV 360
  361 LINYLLPQKA FSLLMALVVA TLLLNWIMIC LAHLRFRAAM RRKGRETQFK ALFYPAGNYL 420
  421 CIAFLALILV LMCTMDDMRL SAILLPVWIV FLFIAFTVLR RKAH