YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLST1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.98
Transmembrane Helix	76	98	0.83
Non-Cytoplasmic	99	117	0.89
Transmembrane Helix	118	142	0.86
Cytoplasmic	143	149	0.89
Transmembrane Helix	150	169	0.93
Non-Cytoplasmic	170	175	0.77
Transmembrane Helix	176	197	0.91
Cytoplasmic	198	207	0.84
Transmembrane Helix	208	228	0.95
Non-Cytoplasmic	229	238	0.77
Transmembrane Helix	239	259	0.91
Cytoplasmic	260	319	0.97
Transmembrane Helix	320	341	0.86
Non-Cytoplasmic	342	356	0.80
Transmembrane Helix	357	377	0.93
Cytoplasmic	378	385	0.91
Transmembrane Helix	386	406	0.95
Non-Cytoplasmic	407	417	0.86
Transmembrane Helix	418	440	0.90
Cytoplasmic	441	451	0.88
Transmembrane Helix	452	472	0.92
Non-Cytoplasmic	473	480	0.77
Transmembrane Helix	481	503	0.90
Cytoplasmic	504	524	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWVTNTVLLY RPNSMNRLTF SYPTRLAHSR KASSFSRFFR SSKRKKRVTT LSTKKPDDDH  60
   61 EISPVPPEKF SADLGWLSAF PHVSVASMAN FLFGYHIGVM NGPIVSIARE LGFEGNSILE 120
  121 GLVVSIFIAG AFIGSIVAGP LVDKFGYRRT FQIFTIPLIL GALVSAQAHS LDEILCGRFL 180
  181 VGLGIGVNTV LVPIYISEVA PTKYRGSLGT LCQIGTCLGI IFSLLLGIPA EDDPHWWRTM 240
  241 LYVASMPGFL LALGMQFAVE SPRWLCKVGR LDDAKVVIRN IWGGSEVEKA VEDFQSVMKN 300
  301 SGSNLNSRWL ELLDKPHSRV AFIGGSLFVL QQFAGINGVL YFSSLTFQNV GITSGAQASL 360
  361 YVGVTNFAGA LCASYLIDKQ GRKKLLIGSY LGMAVSMFLI VYAVGFPLDE DLSQSLSILG 420
  421 TLMYIFSFAI GAGPVTGLII PELSSNRTRG KIMGFSFSVH WVSNFLVGLF FLDLVEKYGV 480
  481 GTVYASFGSV SLLAAAFSHL FTVETKGRSL EEIELSLNSR DDLS