YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25489851
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVMRHDLYF WQVVHHLVVE EGYRVLDMEQ SEVWLESDAL KDRTVIRIKR IDVDWGNQLR  60
   61 ADFEQVRKKM LWLKRQLGVR RLRGEAIYVT MYPPVDDWSS FEAEEKLDRN GNVTLRPTLI 120
  121 VAEESERKAT IAAVNERLSI HLPHVALLDE DGYQMEQMAR YLRQQIRHTA NATQQKERRL 180
  181 FQYGKPYATY GLLVVIAFMY VLLEMNGGST DMPTLIEFGA KYNPAIADGE WWRLLSSMFL 240
  241 HIGILHFMMN SLALFYLGGT VERIYGTSRF FIIYFIAGLA GSIASFALNA HVSAGASGAI 300
  301 FGCFGALLYF GTVHKKLFFR TMGSSVLLIL VFNLAFGFII PMIDNGAHIG GLIGGFLASA 360
  361 VVHLPNHRPR LRQLGFLLLT VLALIGSFAF GFVNEHKAGA DLLALQNAQD LIEAEDIEAA 420
  421 YEVLLESVEQ GNERAEAYFL LSYTEAVLGK YEEAEEHLQK TIDLEPKMHE AHYNLALVYD 480
  481 ELDERQKALE SAQEAVQLDP GNEKYDTFLR SLEE

Type	Start	End	Confidence
Cytoplasmic	1	185	0.99
Transmembrane Helix	186	203	0.96
Non-Cytoplasmic	204	237	0.92
Transmembrane Helix	238	259	0.91
Cytoplasmic	260	269	0.77
Transmembrane Helix	270	288	0.93
Non-Cytoplasmic	289	293	0.71
Transmembrane Helix	294	313	0.92
Cytoplasmic	314	320	0.76
Transmembrane Helix	321	340	0.94
Non-Cytoplasmic	341	346	0.78
Transmembrane Helix	347	365	0.94
Cytoplasmic	366	373	0.84
Transmembrane Helix	374	393	0.95
Non-Cytoplasmic	394	514	0.97