YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25489748
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGKRGLR FSLSETQLGY AMVAPALILV IVVTLWPVAL SFYNSLFDYR LTDPTRSQTM  60
   61 LSSSVDLEAY VNNYYYLDRS LDHLSTSSAP EHQDIFQDIE QSIRQYHEQL QADSHVKERY 120
  121 ATVEEMVNNY EPVRDQSLKY AKLDRDIAEG YQAELSEVLA TVEPLITEAD QEHAELYQNF 180
  181 YHYVQNIETA ILESNFIGFS HYVNYVQDSR MWAAMSNTLF FTVVSVAAEL VLGLAIALLI 240
  241 NRTFKGRGLV RVAVLIPWAI PTAVAAMMWR YLYDGQFGVI AHYFEQLGLI SDSSVLLSTG 300
  301 AGAMFSIIFA DVWKTTPYMA LLLLAGLQTI PNSLYEAAKV DGANRIQTFF KITLPLLKSA 360
  361 ILVALLFRTL DAFRVFDLIF VLTGGGPANS TESISIYAYR TLFSQQNFGA GSALSVIVFL 420
  421 SVALISFAFI KFIGSDLFEG RTRRS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.93
Transmembrane Helix	18	40	0.90
Non-Cytoplasmic	41	218	0.96
Transmembrane Helix	219	240	0.94
Cytoplasmic	241	248	0.85
Transmembrane Helix	249	272	0.87
Non-Cytoplasmic	273	288	0.91
Transmembrane Helix	289	310	0.84
Cytoplasmic	311	353	0.64
Transmembrane Helix	354	372	0.67
Non-Cytoplasmic	373	409	0.60
Transmembrane Helix	410	434	0.88
Cytoplasmic	435	445	0.92