YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15894863, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.97
Transmembrane Helix	12	34	0.83
Non-Cytoplasmic	35	50	0.84
Transmembrane Helix	51	72	0.90
Cytoplasmic	73	82	0.80
Transmembrane Helix	83	101	0.96
Non-Cytoplasmic	102	108	0.72
Transmembrane Helix	109	131	0.92
Cytoplasmic	132	147	0.87
Transmembrane Helix	148	169	0.93
Non-Cytoplasmic	170	175	0.75
Transmembrane Helix	176	196	0.93
Cytoplasmic	197	236	0.96
Transmembrane Helix	237	259	0.90
Non-Cytoplasmic	260	270	0.79
Transmembrane Helix	271	293	0.91
Cytoplasmic	294	300	0.90
Transmembrane Helix	301	320	0.96
Non-Cytoplasmic	321	325	0.91
Transmembrane Helix	326	348	0.89
Cytoplasmic	349	360	0.92
Transmembrane Helix	361	382	0.90
Non-Cytoplasmic	383	391	0.72
Transmembrane Helix	392	410	0.91
Cytoplasmic	411	425	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLSKGEKS WIMYDWANSA YSTAITATIL PLYFKSIALK SGVSAASSTA YWGYSNSIAT  60
   61 LLIAILSPIL GTMADYKGYK MKLFNVFFIL GTSFTLLLSV VPTNYWLLII LFYILTSIGF 120
  121 SGSCIFYDAF LVDVSDNDNM DRVSSLGFGM GYIGSNIPFI LCILIIALAQ LKIIPISFFT 180
  181 ACKISFAITA LWWAIFTIPM IKNVKQTYSI NIEKNPARKS FLRLKSTLKD IKKHKQLFIF 240
  241 LLSYFFYIDG VNTIITMATS YGSDLGINST TMLVILLVMQ FIAFPFSIIF GMLAKKFQGK 300
  301 TMLYVGIVIY SIICVYSYFL RSTLDFWILA ILVGTSQGGI QALSRSYLGK LVPKNKANEF 360
  361 FGFYNIFGKF SAILGPFMVG IVSQVTGNSN KGVLSILVLF LIGGIILKKV PSYEKSEKES 420
  421 NVYST