YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15967074
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	58	0.89
Transmembrane Helix	59	81	0.92
Cytoplasmic	82	90	0.85
Transmembrane Helix	91	110	0.94
Non-Cytoplasmic	111	114	0.88
Transmembrane Helix	115	135	0.94
Cytoplasmic	136	154	0.91
Transmembrane Helix	155	177	0.93
Non-Cytoplasmic	178	207	0.90
Transmembrane Helix	208	225	0.93
Cytoplasmic	226	265	0.91
Transmembrane Helix	266	287	0.89
Non-Cytoplasmic	288	293	0.82
Transmembrane Helix	294	313	0.94
Cytoplasmic	314	323	0.83
Transmembrane Helix	324	348	0.86
Non-Cytoplasmic	349	369	0.87
Transmembrane Helix	370	389	0.91
Cytoplasmic	390	404	0.86
Transmembrane Helix	405	427	0.87
Non-Cytoplasmic	428	435	0.65
Transmembrane Helix	436	455	0.93
Cytoplasmic	456	463	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIAAGRMEE RPRTSRLGIA GWMLFDWAAQ PFFTVITTFI FAPYFVSRLT ADPAHGQAVW  60
   61 GYTLTVAGIV IALLSPVLGA IADASGPRKP WIAFFAAVKI ISLALLWNAA PGSSLIYTAL 120
  121 LLALATVAAE FSIVFNDSMM TRLVSEKEVG RISNIAWGLG YLGGMIVLIA VVALIAGSPQ 180
  181 TGKTAIGLEP LFGLDPAKGE DARITGPISA AWYLVFILPM FLFTPDATRA RMSMAKATAR 240
  241 GFEELKGTLA ELKERAGILR FLIARMIFQD GVNGLLALGG TFAAGMFGWQ TMELGLYGII 300
  301 LNVVAIFGCL YASRLDARLG SKTIVVASLV SLTIATLGIV STGPGFTLFG LVPLGSTDSG 360
  361 GLFGTAAEKA YILYGLLVGV AFGPVQASSR SYLARSVSPD EAGRYFGLYA LSGRATSFLA 420
  421 PASVATITLV TGSARIGMMA LVAFLAVGLV ILLRTPYPAH RPL