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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|37727744
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMLKQEVN LSRRACRPTT TNNDDCLQEQ RTLLTTPTEG GSWHNDTCYG GGGANSRLVT  60
   61 VPAPAKELTD SSRSGGLPSS SSSSSLSCLL ATIVMWCTGQ VLLKLRQAGQ GGWREVQQPP 120
  121 RLSRLCIYVV FCSALLSHNA FVLARPNLSA PASGEKVPVG QLSPLDLAFD ASSGSLTSAS 180
  181 QLKRSAEAAA IIASTAPSAD GGAGHEAEDT ALGHGRVGEG EGGEHGGEHV VERYPVSQVD 240
  241 FSRVETPFVI GVWILSASIA KIFHMTPKLS RIFPESCLLI VVGVIIGVLL RYATNLHVSP 300
  301 LTPNTFFFYM LPPIILDAGY FMPNRMFFDN IGTILLMAVI GTIFNIATIG GSLWACGQTG 360
  361 IFGVDLPFLH IFLFSSLIAA VDPVAVLAVF EEIHVNEVLY IVVFGESLLN DAVTVVMYHM 420
  421 FEVYNEIGAS EIIAVDIVSG IASFFVVALG GTIIGVIWGF LTGLVTRFTD HVRVIEPIFI 480
  481 FVMAYLAYLN AEIFHMSGIL AITFCGITMK NYVEQNVSHK SHTTIKYALK MLSSSAETII 540
  541 FMFLGVATVN NKHVWNTWFV LLTIIFCSVY RILGVLILSA LANRFRIHKL TKVDQFVMSY 600
  601 GGLRGAVAFA LVLLVDVNHI PLQPMFLTTT IAVVYFTVFL QGITIKPLVK ILNVKRSSKR 660
  661 KPTMNERIHE RFMDHMMAGI EDIVGKTGNY NIRDKFKRFD NRFIRPLLIK NLQGPEPKIL 720
  721 ETYSKLTMRD AMDYMRRNPS TIGQMSGTES MSALFRNYTS YFGGSPSFTN LENSTRNLDM 780
  781 QELDYNPSKK DLTDAKIHHL LSEELKPYRR HRRLSYSRHA VDDRDLSTQV NYKMQMNIRR 840
  841 MISEKKHHKR SKRVKDGKQQ NHVSFPEFVQ NGSAKQFAND YINEVLHEDN EDEERQAAGP 900
  901 SEDWDGGGLT FTAKSSLDER GAAKEDKRFS RESRFLESEQ RVATPTAIES VLPWKRVDES 960
  961 DDNGAIKQNE FPSWASNKEY LAYNSPSATF LGGLTQPKQA KSVIGLFRRE SSGSGGVVIG1020
 1021 GVTDSETSTP VAATTPVGRM AAVPKDKRSA SIAGYITIDG GDTAGNPMLD PLGISRAGPH1080
 1081 ATAFPVTASH RRNNRRGSML ELSGEAIPEE NYTKSLPERD KYGARRAPAL IKASSTNTPK1140
 1141 SAGRRSGGGG GPVNPQTTAL LSASSTDSDE DDEEEGSGDR HRADDATRRL NGAGNNDDED1200
 1201 EDDDEDDDDE DEDCADEQHP I

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle