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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28315970
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSNFNNKN SHNPFDNVSD DDDDLFDDIE PVQQGSPSQP QHHHIATNAN NRYQFDNSPY  60
   61 RRSSSYDVYN NNPFVGNTSY TNTTTPPPML QQQQQPALSP LQPPLFNNNG NNNTLYQQQQ 120
  121 YKKYRTPTSS NSNSSYSTMV DNDEFQLSRK KTVAFTEPEY PPLTYSPGKK RDTATSTNVY 180
  181 DYDLEEMDDG SLVASGGSGG IHADFAGDDY IINPLQDADD DDSLDPFGDD ESLFSDTGEE 240
  241 ILRRGTTIKK RHSTRRGRRN GTLKRGKSRN TEYGGENEKL VNNDNGDEED GDGDDDDDDF 300
  301 KPKLTYTKTI KKAKLINGNY VIDAPVPKTL LETYGKKINY HQDNVSREMS FVRYTAATCG 360
  361 PSNYVKFNYN LRQELYAPSR QTEIMICITM YNEDEVLLAR TLKGVFENIR DLTNRSDPNW 420
  421 GDDSWKKIVV CIVNDGRLEL NKRTETLLAA LGIFQDGYAK SKINDKSVKA HIYEYTSTVG 480
  481 IDAVNDKVHL ACNSTPVQFL FCLKEKNSRK INSHRWCFQA FAPILNPKVI MLLDCGTKPS 540
  541 RDAFFHLWKS FKDPNVAGAC GEMRVALGPS KNLLMNPLVA AQNFEYKISN VLDKPMESVF 600
  601 GFISVLTGAF SAYRYEALLN VNGEGPLEKY FKGEYLHQMT TEGDSNDPDF DDERDVKEKN 660
  661 FQQAGIFTSN MYLAEDRILC FELVAKKNHN YILRYVNEAK AETDVPENID EFVLQRRRWL 720
  721 NGSMFAAGYA VFHWTKIWRS NHSLFRKLFL QLEFYYQLVT ILVSWFSLAS FFLVFRILTA 780
  781 NLGSSDMNFN VGKYLAIIFL WFYVGSVVCT FVLAFGNTPR GTRKFYLVIA VFFAILMAYM 840
  841 MFAAIFLAVH TVNSIVHNHK TDFTIALVFT NTKFRDLVVS MVSTYLLYFI GAFMYGEPSF 900
  901 MFTSFAQYVL LSPTYINVLN IYAFCNIHDV SWGTKGVEQA KDLGSAKSFG KNSDELVMIA 960
  961 PENLTQELND KYVATLENLR TMIPVKDIPQ ESNKKKDDLA YYAFIRTITV LVWMLTNAIL1020
 1021 IAIVLEAGGV DILSGNKSGQ TNADGSISGN SQVFLTIILW IVAGLALFRF IGAFLFLIFK1080
 1081 SFRPLKWKLR AKRENKRNRN QNRNV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle