YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48716406, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	513	0.67
Transmembrane Helix	514	533	0.92
Non-Cytoplasmic	534	546	0.82
Transmembrane Helix	547	568	0.88
Cytoplasmic	569	583	0.91
Transmembrane Helix	584	605	0.93
Non-Cytoplasmic	606	628	0.96
Transmembrane Helix	629	652	0.93
Cytoplasmic	653	661	0.85
Transmembrane Helix	662	679	0.69
Non-Cytoplasmic	680	691	0.57
Transmembrane Helix	692	710	0.77
Cytoplasmic	711	735	0.80
Transmembrane Helix	736	756	0.86
Non-Cytoplasmic	757	762	0.72
Transmembrane Helix	763	783	0.89
Cytoplasmic	784	1529	0.95
Transmembrane Helix	1530	1552	0.89
Non-Cytoplasmic	1553	1581	0.88
Transmembrane Helix	1582	1601	0.87
Cytoplasmic	1602	1615	0.69
Transmembrane Helix	1616	1634	0.70
Non-Cytoplasmic	1635	1698	0.49
Transmembrane Helix	1699	1723	0.88
Cytoplasmic	1724	1775	0.83
Transmembrane Helix	1776	1794	0.76
Non-Cytoplasmic	1795	1805	0.79
Transmembrane Helix	1806	1827	0.90
Cytoplasmic	1828	1843	0.87
Transmembrane Helix	1844	1863	0.94
Non-Cytoplasmic	1864	1870	0.70
Transmembrane Helix	1871	1892	0.87
Cytoplasmic	1893	1910	0.82
Transmembrane Helix	1911	1933	0.90
Non-Cytoplasmic	1934	1969	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSGRRV GGPRGGGESS PSPAAGAGAA ASGGRRILRT QTAGNLGESI FDSEVVPSSL  60
   61 VEIAPILRVA NEVEGSNPRV AYLCRFYAFE KAHRLDPTSS GRGVRQFKTA LLQRLEREND 120
  121 PTLKGRVKQS DAREMQSFYQ HYYKKYIQAL QNAADKADRA QLTKAYQTAA VLFEVLKAVN 180
  181 VSQKIEVDQA ILETHNQVEE KKKLYLPYNI LPLDPDSANQ AIMRYPEIQA AFHALRNTRG 240
  241 LPWPKDHEKK PDADLLGWLQ AMFGFQKDNV SNQREHLILL LANVHIRQIP KPDQQPKLDD 300
  301 RALDTVMKKL FKNYKRWCKY LGRKSSLWLP TIQQEVQQRK LLYMGLYLLI WGEAANLRFM 360
  361 PECLCYIYHH MAFELYGMLA GNVSPTTGEN VKPAYGGDEE AFLKKVVTPI YKVIEKEAER 420
  421 SESSERSERS KTTKSKHSHW RNYDDLNEYF WSRDCFRLGW PMRADADFFK TPDYAYHDEV 480
  481 SGENRRVGSG QWMGKVNFVE IRSFWHIFRS FDRMWSFLIL SLQAMIIIAW NGGTPSDIFD 540
  541 AGVFKQVLSI FITAAILKLG QAILDIILSW KARRSMSLAG KLRYILKLIS AAAWVVILPV 600
  601 TYAYTWENPT GLARTIKSWL GDGQNQPSLY ILAVVIYLAP NMLSAVLFLF PVLRRALERS 660
  661 NLKVVTFMMW WSQPRLFVGR GMHEGAFSLF KYTMFWVLLL ATKLIVSYYV EIKPLVRPTK 720
  721 DIMKEPIRTF QWHEFFPHGN NNIGIVIALW APIILVYFMD TQIWYAIFST LIGGIYGACR 780
  781 RLGEIRTLGM LRSRFESLPK AFNQRLIPSD SNKRRGIRAA FSSKPTKTPE DSKEEEKIAA 840
  841 RFAQIWNLII TSFREEDLID NREKDLLLVP YCKDRDMDII QWPPFLLASK IPIALDMAAD 900
  901 SEGKDRDLKK RVKSDPYFTY AIKECYASFK NIIYTLVVGA KERDVIQKIF TVVDDHIAQD 960
  961 TLIKELNMSN LPTLSKKFIE LLELLQKNNK EDQGQVIILF QDMLEVVTRD IMDEQLSGLL1020
 1021 ESVHGGNNRR YEGITPLDQQ DQLFTKAIDF PVKESHAWTE KIKRLHLLLT VKESAMDVPT1080
 1081 NLDARRRISF FANSLFMDMP SAPKVRHMLP FSVLTPYYKE DVLFSSQALE DQNEDGVSIL1140
 1141 FYLQKIYPDE WKHFLQRVDC NTEEELRETE QLEDELRLWA SYRGQTLTRT VRGMMYYRQA1200
 1201 LVLQAFLDMA RDEDLREGFR AADLLNDESP LLTQCKAIAD MKFTYVVSCQ QYGIQKRSGD1260
 1261 HRAQDILRLM TTYPSLRVAY IDEVEEPSKD RNKKIEKVYY SALVKAAVTK PDDPGQKLDQ1320
 1321 DIYRIKLPGN AMLGEGKPEN QNHAIIFTRG EGLQTIDMNQ EHYMEETLKM RNLLQEFLKK1380
 1381 HDGVRYPSIL GVREHIFTGS VSSLAWFMSN QETSFVTIGQ RVLANPLRVR FHYGHPDIFD1440
 1441 RLFHLTRGGV SKASKIINLS EDIFAGFNST LREGNVTHHE YMQVGKGRDV GLNQISLFEA1500
 1501 KIANGNGEQT LSRDVYRLGH RFDFFRMLSC YYTTIGFYFS TMMTVWTVYV FLYGRLYLVL1560
 1561 SGLDEALATG KRFIHNEPLQ VALASQSFVQ LGFLMALPMM MEIGLERGFR TALSDFVLMQ1620
 1621 LQLASVFFTF SLGTKTHYYG TTLLHGGAEY RATGRGFVVF HAKFAENYRL YSRSHFVKGI1680
 1681 ELLILLIVYE IFGQSYRGAI AYIFITFSMW FMVVTWLFAP FLFNPSGFEW QKIVDDWTDW1740
 1741 NKWISNRGGI GVPPEKSWES WWEKEQEPIK YSGKRGIVLE IVLALRFFIY QYGLVYHLNI1800
 1801 TKHTKSVLVY CLSWVVIFVI LLVMKTVSVG RRKFSADFQL VFRLIKGLIF ITFISIIIIL1860
 1861 IAIPHMTVQD IFVCILAFMP TGWGLLLVAQ AIKPVIVRIG LWGSIKALAR GYEIIMGLLL1920
 1921 FTPIAFLAWF PFVSEFQTRM LFNQAFSRGL QISRILGGHK KDRATRNKE