YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11262200
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFSVNETH ATSCGSKTED KNEKEYPLNK IIILIALSLF SSSIWAGTSA HALSQQGYTQ  60
   61 TRYPIVLVHG LFGFDTLAGM DYFHGIPQSL TRDGAQVYVA QVSATNSSER RGEQLLAQVE 120
  121 SLLAVTGAKK VNLIGHSHGG PTIRYVASVR PDLVASVTSI GGVHKGSAVA DLVRGVIPSG 180
  181 SVSEQVAVGL TQGLVALIDL LSGGKAHPQD PLASLAALTT EGSLKFNQYY PEGVPTSACG 240
  241 EGAYQVNGVR YYSWSGAATV TNILDPSDVA MGLIGLVFNE PNDGLVATCS THLGKVIRDD 300
  301 YRMNHLDEIN GLLGIHSLFE TDPVTLYRQH ANRLKQAGL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.85
Transmembrane Helix	31	52	0.84
Non-Cytoplasmic	53	339	0.76