YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229511542, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVYHFLTL LSIGIYWLLV AGVTIRVVLK RRAVSVSLAW LMVIYIIPFV GVLCYFLFGE  60
   61 LNLGRKRAER AKEMFTPFGH WFRSLNDCQA HVQEGMGAHI SRIDELCNNR MGIPALSGNT 120
  121 LSLLNSPNEI LHAIIDDIER AQFQIRMVFY IWHPGGLADA VASAVIQASK RGVNVKLLLD 180
  181 SAGSPRFFRS PWEKMMRDAG IEVVQALEVS PWRIFLRRLD LRQHRKIIVI DDEIAYTGSM 240
  241 NMVDPAYFKQ NAGVGQWIDI MVRVTGPTVN VLSAIHCWDW EFETGSRMLP KNPECRLEPN 300
  301 QPQHPIQVVP SGPGMPENLI SQVLTLAINQ ANRSVCITTP YFVPSADLLA TLKMTAQRGI 360
  361 KVDIIIPKKN DSLMVQWASR AFYGELLEAG VQIHEFDGGL LHTKSVVIDQ QFCLVGTVNL 420
  421 DMRSLWLNFE LTLAVDDLEF TQQMHWLQQQ YIDQSHSVVY AEWEQRPWYN RFLERVFYLF 480
  481 NPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.73
Transmembrane Helix	7	29	0.92
Cytoplasmic	30	37	0.69
Transmembrane Helix	38	59	0.95
Non-Cytoplasmic	60	484	0.89