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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|229608072, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSIKAMFVL LFCLMAILAV AMFKVTRQVA DLRLESHQYS EQLFHFYRLS QELKQSSDHL  60
   61 TKFARAYAST GNERWLRMFN QVLNVRNGKL PAPSNNDYEF WDVVVLNDSS ELTPNANQRY 120
  121 PTLIERIRQS GIGSVEFLEL QNALALSDQL VALEREAFMA VKGWKREFAG EYRYTGEPDL 180
  181 NFARSLLYSE KYFLEKAKIM AAIGSAHSNI VDRIESEVRA ADEKAQFYER VNLVLVSLSL 240
  241 LVIIASFILL WVIYIAPLSI LLKTVVRQVR SEDYKFTLTQ KAYGELQRFI DSLNVVFHHI 300
  301 SEQLSFNTLV KDFNIIIRNH PTTEALCNQV TQFLLHHFPV ELIGLYLYQN GVLTRIAGVG 360
  361 QSESAQRDYS DPTTTHCSVL RSGKPYAMKS LNGNFQVVST SGVIALNEVY YLPLQVNNQP 420
  421 IALLELGTVG MLTMQQYHWL SQMLDDLSVA IQLSQNAEQQ RLAERKVLEQ SQLNQEILDA 480
  481 TPNPMYCLSA DGKFLTVNAK FLDLMGLYNN EVIDKEPQEI FPAEVAERFA AAHQVLTQQQ 540
  541 SSQNYEVSLV DYTGVQREML VYEASFSDRA DKVNGIVGIL LDMTERKEME DELRKAKEAA 600
  601 DAMSQAKGDF LANMSHEIRT PMNAILGMAH LALNTPLDTT QRKYVTRINE SAKNLLGIIN 660
  661 DILDFSKMEA GKLNVERIDF NLDDVLDNVT AVVSLKAQEK GIEFLMDIDP HIPLGLIGDP 720
  721 LRLGQVMVNL CGNAVKFTSQ GEIVLSARVS QLNEQQVTLR FAVKDTGIGI AQDKLDDLFD 780
  781 AFSQADNSIT RQYGGTGLGL SISKQLVELM GGQITVHSEE GKGSTFEFSV VCGLQDAKMR 840
  841 DISQPVHGLA DKRVLVVDDN DSARHILDSL LTAMRFNVVT VSNGFEALSE IQQKPFDMLF 900
  901 VDWNMPGMNG IELLTRVKTL GLRGHMKSFL VTAYGREINL DGENSKLVDA LIVKPVNPSN 960
  961 LLDAIVTSYG IEHVRHKTNE AHHNSRPNFA GQSLLLVEDN EVNQEVALGL LQDTGLNVVV1020
 1021 ANHGQEALER LEHADFDLVL MDMQMPVMDG ITATEHIRAN PRWHSLPIVA MTANAMAIDI1080
 1081 ERCLQAGMND HLSKPIEVDK FYQVLRHFLQ VSDEQSFSSH SPNKPSASKP AMNALLDLPQ1140
 1141 LTGVDLEQAI FRIGGNQQRY FEILRHFIDS QVDELNSVTG LIEAQDWSSA TRVAHTLKGS1200
 1201 AANLGLEALA QLAAEMEQSL EQQVLPSFEL LQQAQSLLTQ VDDELSAWEH QHKEPLLAEN1260
 1261 LDWGLWYQQL QQAINDYDVT ALSLSKSIRQ VSQWDSAQQA ALISAIEDFD FEQAKALLAS1320
 1321 YPQLSGERLN Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle