YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tr\|Q87WD8\|Q87WD8...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	53	0.91
Non-Cytoplasmic	54	62	0.86
Transmembrane Helix	63	86	0.88
Cytoplasmic	87	97	0.83
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	135	0.84
Transmembrane Helix	136	156	0.95
Cytoplasmic	157	167	0.88
Transmembrane Helix	168	188	0.95
Non-Cytoplasmic	189	205	0.81
Transmembrane Helix	206	228	0.89
Cytoplasmic	229	237	0.91
Transmembrane Helix	238	258	0.89
Non-Cytoplasmic	259	278	0.72
Transmembrane Helix	279	302	0.85
Cytoplasmic	303	312	0.81
Transmembrane Helix	313	332	0.91
Non-Cytoplasmic	333	339	0.73
Transmembrane Helix	340	362	0.91
Cytoplasmic	363	389	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETRLAAIM GGSHPLAALS NPREAIRQFT PNWFAATMGT GILALALGQL PFVAQWPKAL  60
   61 GEALWFFNIV LFCLFTLMYA SRWVLFFDEA KQIFGHSTVS MFFGTIPMGL ATIINGFLLY 120
  121 GLPRWGGGVV ALAEVLWWID VTMALACGVL IPYMMFTRQQ HSIDQMTAVW LLPVVAAEVA 180
  181 AASGGLLAPH LADASAQFTM LITSYVLWAY SVPVALSILV ILLLRMALHK LPHESMAASS 240
  241 WLSLGPIGTG ALGMLLLGND APAIFAAHGM ASIGGVAEGI GLIGGVLFWG LGLWWMVLAL 300
  301 LITGRYFREG IPFNLGWWGF TFPLGVYAVT TLKLGSMLHL TFFSFFGVGL VLMLTVMWMI 360
  361 VAAKTLAGAY RGNLFVSPCI HSLSKASKT