YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tr\|Q87WJ8\|Q87WJ8...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	26	0.90
Non-Cytoplasmic	27	41	0.72
Transmembrane Helix	42	63	0.84
Cytoplasmic	64	78	0.66
Transmembrane Helix	79	98	0.84
Non-Cytoplasmic	99	104	0.63
Transmembrane Helix	105	124	0.84
Cytoplasmic	125	144	0.75
Transmembrane Helix	145	166	0.85
Non-Cytoplasmic	167	172	0.71
Transmembrane Helix	173	193	0.93
Cytoplasmic	194	249	0.97
Transmembrane Helix	250	270	0.90
Non-Cytoplasmic	271	284	0.80
Transmembrane Helix	285	306	0.92
Cytoplasmic	307	318	0.78
Transmembrane Helix	319	341	0.85
Non-Cytoplasmic	342	346	0.76
Transmembrane Helix	347	368	0.92
Cytoplasmic	369	380	0.82
Transmembrane Helix	381	403	0.90
Non-Cytoplasmic	404	410	0.81
Transmembrane Helix	411	431	0.96
Cytoplasmic	432	461	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKSKPTHVR YLILLMLFLV TTINYADRAT IAIAGSSIQK DLGISAVTLG YIFSAFGWAY  60
   61 VAGQIPGGWL LDRFGSKKVY AMSIFTWSLF TLLQGYVGEF GVSTAIVALF MLRFLVGLAE 120
  121 APSFPGNARI VAAWFPTAER GTASAIFNSA QYFATVLFAP LMGWIVYTYG WQHVFVVMGA 180
  181 IGIVFSMIWM KVIYGPRNHP MINEAEFEHI SSNGALVDLD QDKGKGKEKA ASSGPKWDYI 240
  241 RQLLTNRMML GIYLSQYCIN GITYFFLTWF PVYLVQERGM TILKAGIIAS LPAICGFIGG 300
  301 VLGGVISDYL LRKGHSLTFA RKAPIIGGLL LSTSIVTCNY VDVEWVVVGF MALAFFGKGV 360
  361 GALGWAVMSD VSPKQIAGLS GGLFNTFGNV ASITTPIVIG YIISSTGSFK WALVFVGANA 420
  421 LLAVISYIFI VGEIKRVELK EPPAKGPLLN DSVSDLSEAK S