YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31433313, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.45
Transmembrane Helix	46	66	0.93
Cytoplasmic	67	74	0.60
Transmembrane Helix	75	94	0.92
Non-Cytoplasmic	95	99	0.54
Transmembrane Helix	100	122	0.85
Cytoplasmic	123	134	0.61
Transmembrane Helix	135	157	0.85
Non-Cytoplasmic	158	164	0.61
Transmembrane Helix	165	185	0.94
Cytoplasmic	186	519	0.74
Transmembrane Helix	520	537	0.69
Non-Cytoplasmic	538	559	0.76
Transmembrane Helix	560	585	0.77
Cytoplasmic	586	596	0.85
Transmembrane Helix	597	619	0.91
Non-Cytoplasmic	620	626	0.78
Transmembrane Helix	627	648	0.86
Cytoplasmic	649	659	0.71
Transmembrane Helix	660	681	0.89
Non-Cytoplasmic	682	689	0.75
Transmembrane Helix	690	712	0.94
Cytoplasmic	713	740	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAVLVAIA ASIGNLLQGW DNATIAGAVL YIKKEFNLQS EPLIEGLIVA MSLIGATIIT  60
   61 TFSGAVADSF GRRPMLIASA VLYFVSGLVM LWAPNVYVLL LARLIDGFGI GLAVTLVPLY 120
  121 ISETAPTDIR GLLNTLPQFS GSGGMFLSYC MVFGMSLMPQ PDWRIMLGVL SIPSLIYFAL 180
  181 TIFYLPESPR WLVSKGRMAE AKRVLQGLRG REDVSGEMAL LVEGLGVGKD TKIEEYIIGP 240
  241 DDELADEGLA PDPEKIKLYG PEEGLSWVAR PVHGQSALGS ALGLISRHGS MVSQGKPLVD 300
  301 PVVTLFGSVH EKMPEIMGSM RSTLFPNFGS MFSVAEQQQA KGDWDAESQR EGEDYGSDHG 360
  361 GDDIEDSLQS PLISRQATSV EGKEIAAPHG SIMGAVGRSS SLMQGGEAVS SMGIGGGWQL 420
  421 AWKWTEREGA DGEKEGGFQR IYLHEEGVTG DRRGSILSLP GGDVPPGGEF VQAAALVSQP 480
  481 ALYSKELMEQ RLAGPAMVHP SQAVAKGPKW ADLFEPGVKH ALFVGIGIQI LQQFAGINGV 540
  541 LYYTPQILEQ AGVGVLLANI GLSSSSASIL ISGLTTLLML PSIGIAMRLM DMSGRRFLLL 600
  601 ATIPILIVAL AILILVNILD VGTMVHASLS TVSVILYFCF FVMGFGPIPN ILCAEIFPTT 660
  661 VRGICIAICA LTFWIGDIIV TYTLPVMLNA IGLAGVFGIY AVVCILAFLF VFMKVPETKG 720
  721 MPLEVITEFF SVGAKQAKED