YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DISP1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	186	0.91
Transmembrane Helix	187	209	0.87
Non-Cytoplasmic	210	497	0.97
Transmembrane Helix	498	520	0.87
Cytoplasmic	521	525	0.78
Transmembrane Helix	526	545	0.93
Non-Cytoplasmic	546	558	0.70
Transmembrane Helix	559	580	0.87
Cytoplasmic	581	597	0.86
Transmembrane Helix	598	620	0.89
Non-Cytoplasmic	621	631	0.73
Transmembrane Helix	632	654	0.84
Cytoplasmic	655	717	0.89
Transmembrane Helix	718	736	0.95
Non-Cytoplasmic	737	980	0.93
Transmembrane Helix	981	1002	0.88
Cytoplasmic	1003	1007	0.71
Transmembrane Helix	1008	1030	0.90
Non-Cytoplasmic	1031	1037	0.76
Transmembrane Helix	1038	1057	0.90
Cytoplasmic	1058	1073	0.78
Transmembrane Helix	1074	1096	0.85
Non-Cytoplasmic	1097	1105	0.59
Transmembrane Helix	1106	1125	0.90
Cytoplasmic	1126	1521	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVISGSDSV LLSNGSISTS TSNPSPLSPS DGDLPAQHLG PRETPRTKAS PNGCLQLNGT  60
   61 VKSSFLPLDN QRTPQTPTQC CHPCPYHHPV SSHSNHQECH PEAGLAASPA LASCRMQPHS 120
  121 EYSASLCPNH SPVYQAAHCL QPSPSFCLHH PWPDHFQHQP VRQHLTIIRP SRPFKFPRSY 180
  181 AALLADWPVV VLGMCTLLIV VCALVGVLVP ELPDFSDPLL GFEPRGTTIG QRLVTWNNMM 240
  241 RNTGYKATLA NYPYKYAEEQ ARSHRDDRWS DDHHERERRE VDWNFQKDSF FCDVPSDGYS 300
  301 RVVFASAGGE TLWNLPAIKS MCDVDNSRIR SHPQFSDLCQ RTTAVSCCPS WTLGNYIAIL 360
  361 NNRSSCQKIV ERDVSHTLKL LRTCAKHYQN GTLGPDCWDK AARRKDQLKC TNVPRKCTKY 420
  421 NAVYQILHYL VDKDFMTPKT ADYAVPALKY SMLFSPTEKG ESMMNIYLDN FENWNSSDGI 480
  481 TTVTGIEFGI KHSLFQDYLL MDTVYPAIAI AIVLLIMCVY TKSMFITLMT MFAIISSLIV 540
  541 SYFLYRVVFN FEFFPFMNLT ALIILVGIGA DDAFVLCDVW NYTKFDKPRA ETSEAVSVTL 600
  601 QHAALSMFVT SFTTAAAFYA NYVSNITAIR CFGVYAGTAI LVNYVLMVTW LPAVIVLHER 660
  661 YLLNIFTCFR KPQPQAYDKS CWAVLCQKCR RVLFAVSEAS RIFFEKVLPC IVIKFRYLWL 720
  721 IWFLALTVGG AYIVCVNPKM KLPSLELSEF QVFRSSHPFE RYDAEFKKLF MFERVHHGEE 780
  781 LHMPITVIWG VSPEDSGDPL NPKSKGELTL DSTFNIASPA SQAWILHFCQ KLRNQTFFHQ 840
  841 TEQQDFTSCF IETFKQWMEN QDCDEPALYP CCSHCSFPYK QEVFELCIKK AIMELDRSTG 900
  901 YHLNNKTPGP RFDINDTIRA VVLEFQSTFL FTLAYEKMQQ FYKEVDSWIS HELSSAPEGL 960
  961 SRGWFVSNLE FYDLQDSLSD GTLIAMGLSV AVAFSVMLLT TWNIIISLYA IVSIAGTIFV1020
 1021 TVGSLVLLGW ELNVLESVTI SVAVGLSVDF AVHYGVAYRL APDPDREGKV IFSLSRMGSA1080
 1081 IAMAALTTFV AGAMMMPSTV LAYTQLGTFM MLVMCVSWAF ATFFFQCLCR CLGPQGTCGQ1140
 1141 IPFPTKLQCS PFSHTLSARP GDRGPSKTHA ASAYSVDARG QKSQLEHEFY ELQPLASHSC1200
 1201 TSSEKTTYEE PHTCSEFFNG QAKNLRMPVP AAYSSELTKS PSSEPGSALL QSCLEQDTVC1260
 1261 HFSLNPRCNC RDAYTHLQYG LPEIHCQQMG DSLCHKCAST AGGFVQIQSS VAPLKASHQA1320
 1321 AEGLLHPAQH MLPPGMQNSR PRNFFLHSVQ HFQAQENLGR TSTHSTDERL PRTAELSPPP1380
 1381 SDSRSTESFQ RACCHPENNQ RRLCKSRDPG DTEGSGGTKS KVSGLPNQTD KEEKQVEPSL1440
 1441 LQTDETVNSE HLNHNESNFT FSHLPGEAGC RSCPNSPQSC RSIMRSKCGT EDCQTPNLEA1500
 1501 NVPAVPTHSD LSGESLLIKT L