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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20042880, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.19
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHAVHRHGG ISLRSQQMAL LHWKSTLQST GPQMRSSWQA STSPCNWTGI TCRAAHQAMS  60
   61 WVITNISLPD AGIHGQLGEL NFSSLPFLTY IDLSSNSVYG PIPSSISSLS ALTYLDLQLN 120
  121 QLTGRMPDEI SELQRLTMLD LSYNNLTGHI PASVGNLTMI TELSIHRNMV SGPIPKEIGM 180
  181 LANLQLLQLS NNTLSGEIPT TLANLTNLDT FYLDGNELSG PVPPKLCKLT NLQYLALGDN 240
  241 KLTGEIPTCI GNLTKMIKLY LFRNQIIGSI PPEIGNLAML TDLVLNENKL KGSLPTELGN 300
  301 LTMLNNLFLH ENQITGSIPP GLGIISNLQN LILHSNQISG SIPGTLANLT KLIALDLSKN 360
  361 QINGSIPQEF GNLVNLQLLS LEENQISGSI PKSLGNFQNM QNLNFRSNQL SNSLPQEFGN 420
  421 ITNMVELDLA SNSLSGQLPA NICAGTSLKL LFLSLNMFNG PVPRSLKTCT SLVRLFLDGN 480
  481 QLTGDISKHF GVYPKLKKMS LMSNRLSGQI SPKWGACPEL AILNIAENMI TGTIPPALSK 540
  541 LPNLVELKLS SNHVNGVIPP EIGNLINLYS LNLSFNKLSG SIPSQLGNLR DLEYLDVSRN 600
  601 SLSGPIPEEL GRCTKLQLLR INNNHFSGNL PATIGNLASI QIMLDVSNNK LDGLLPQDFG 660
  661 RMQMLVFLNL SHNQFTGRIP TSFASMVSLS TLDASYNNLE GPLPAGRLFQ NASASWFLNN 720
  721 KGLCGNLSGL PSCYSAPGHN KRKLFRFLLP VVLVLGFAIL ATVVLGTVFI HNKRKPQEST 780
  781 TAKGRDMFSV WNFDGRLAFE DIVRATEDFD DKYIIGAGGY GKVYRAQLQD GQVVAVKKLH 840
  841 TTEEGLGDEK RFSCEMEILT QIRQRSIVKL YGFCSHPEYR FLVYEYIEQG SLHMTLADDE 900
  901 LAKALDWQKR NILIKDVAQA LCYLHHDCNP PIIHRDITSN NILLDTTLKA YVSDFGTARI 960
  961 LRPDSSNWSA LAGTYGYIAP ELSYTSLVTE KCDVYSFGMV MLEVVIGKHP RDLLQHLTSS1020
 1021 RDHNITIKEI LDSRPLAPTT TEEENIVSLI KVVFSCLKAS PQARPTMQEV YQTLIDYQTS1080
 1081 SFLSKNCSRV ILDELWDS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle