YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218199472
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSALLRAL RRPSSEAALR LAASVRVQGV TGYRHLNNRN LSVFNEFSKQ LKGEAKSNPE  60
   61 FQKSMKEFSE KLSGVKEDLK VRTKQTAETI YKSVDDVLTE AEATSKKVTA NVKEKMSAAT 120
  121 EEVKESFRLG KEDTSSCKDG SPETSKHEYS ETSSHSDDKS QAGTSGYTLF NKLRSTLSSA 180
  181 SPVLSGAFAK LRDTRVSTYA KQGYEIFKDE LSSSSSRKKR NHARHASAGT VEKSTRTELV 240
  241 IVPTKKSVLG EKWEAFKNKM RGHPAYKRVN EYTKPVVNIG QEVAEDVRER WETSDNPVVQ 300
  301 KIQDLNESIF EETATAVSFR EIRQRDPSFS LPDFAGDVQE MIKPVLTAYS KGDVKTLKKY 360
  361 CTKEVIERCK GERDAYASQG IFFDHKILHI SDADVRETKM MGSTPIIIVG FQTQQIYCVR 420
  421 DREGQVTEGG QDTIQTVFYA WAMQLMDSDE VPEEESYYPV WRLREIQQVG IKALI

Type	Start	End	Confidence
Signal Peptide	1	29	0.65
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	475	0.99