YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MEX1_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.91
Transmembrane Helix	89	111	0.76
Non-Cytoplasmic	112	124	0.80
Transmembrane Helix	125	146	0.91
Cytoplasmic	147	153	0.85
Transmembrane Helix	154	175	0.92
Non-Cytoplasmic	176	182	0.78
Transmembrane Helix	183	202	0.95
Cytoplasmic	203	210	0.71
Transmembrane Helix	211	230	0.89
Non-Cytoplasmic	231	239	0.65
Transmembrane Helix	240	258	0.94
Cytoplasmic	259	266	0.80
Transmembrane Helix	267	289	0.88
Non-Cytoplasmic	290	302	0.83
Transmembrane Helix	303	320	0.93
Cytoplasmic	321	328	0.65
Transmembrane Helix	329	352	0.75
Non-Cytoplasmic	353	359	0.67
Transmembrane Helix	360	378	0.87
Cytoplasmic	379	399	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVSSVRL PLRAAPPLYG RREWRADGAR APSPALVAVK PLSCRAPASY RSALLLHRRR  60
   61 RYALPPVAAT ATSKPVLKDP KKYQEWDSLT AKFAGAANVP FLLLQLPQII LNARNLLAGN 120
  121 KTALFAVPWL GMLTGLLGNL SLLSYFAKKK ETGAVIVQTL GVISTYVVIA QLAMAESMPL 180
  181 PQFVATSAVV AAGLLLNFLN YFGWLPGTLW LLWEDFITIG GLAVLPQVMW STFVPFIPNS 240
  241 LLPGIISGSL AATAVVMARM GKLSKGGINF VGSLSGWTAT LLFMWMPVAQ MWTNYLNPSN 300
  301 IKGLSAFTML LAMIGNGLMI PRAVFIRDLM WFTGSAWASF LQGWGNLACM YCFDSISRES 360
  361 FLATTFGLLL WLGFTLWRDT IAHGNSSPVT SLKELLFGK