YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTRA_SYNY3
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQAVFPIA PHRADFFPRF VLSNSSANKC HQAMKDVSLH SPKQTPSKIS LAYLGLVLVG  60
   61 MGIGAGGTFV LTNPQWADHL TNNSVISPLV TNQSIAPANE SLATNLQSRL SPREPSNFVV 120
  121 DVVESTGPAV VRINAQKTVK SQVPQAFNDP FLQRFFGSQM PPMPNERVQR GTGSGFIVSN 180
  181 DGKIFTNAHV VDGADEVTVT LKDGRSFPGR VMGSDPSTDV AVVKIEAGDL PTVALGDSDH 240
  241 LQVGEWAIAI GNPLGLDNTV TTGILSATGR RSADIGVPDK RVEFIQTDAA INPGNSGGPL 300
  301 LNADGQVIGM NTAIIQNAQG IGFAIPINKA QEIAQQLIAT GKVEHAYLGI QMVTMTPELQ 360
  361 SQIRQETGMN IPVDKGVVIM QVMPNSPAAI AKLEQGDVLQ SLQGQPVENA EQVQSLVGKL 420
  421 AVGDEVELGI LRNGQQQNLT VTIGALPSAP PQ

Type	Start	End	Confidence
Cytoplasmic	1	48	0.95
Transmembrane Helix	49	71	0.88
Non-Cytoplasmic	72	452	0.98