YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82735133, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	29	0.86
Non-Cytoplasmic	30	46	0.77
Transmembrane Helix	47	70	0.81
Cytoplasmic	71	78	0.79
Transmembrane Helix	79	107	0.77
Non-Cytoplasmic	108	108	0.48
Transmembrane Helix	109	131	0.71
Cytoplasmic	132	144	0.79
Transmembrane Helix	145	167	0.84
Non-Cytoplasmic	168	172	0.78
Transmembrane Helix	173	193	0.93
Cytoplasmic	194	241	0.96
Transmembrane Helix	242	263	0.89
Non-Cytoplasmic	264	279	0.81
Transmembrane Helix	280	303	0.88
Cytoplasmic	304	311	0.91
Transmembrane Helix	312	334	0.85
Non-Cytoplasmic	335	339	0.79
Transmembrane Helix	340	362	0.90
Cytoplasmic	363	373	0.86
Transmembrane Helix	374	396	0.90
Non-Cytoplasmic	397	403	0.82
Transmembrane Helix	404	424	0.94
Cytoplasmic	425	454	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQATKKTHVR YLILFMLFLV TTINYADRAT IAIAGSSLQK DLGIDAVTLG YIFSAFGWAY  60
   61 VAGQIPGGWL LDRFGSKNVY AFSIFTWSLF TLLQGFVGGL PVAWAVVTLF TLRFLVGFAE 120
  121 APSFPGNARI VAAWFPTQER GTASAIFNSA QYFATALFAP IMGWIVFSFG WEHVFVVMGV 180
  181 LGIIFSMVWL KTIYNPRQHP RISQSELEHI EQNGGLVDMD QKRGSDGPKW GYIKQLLTSR 240
  241 MLLGVYLGQY CINAITYFFL TWFPVYLVQE RGMTILKAGF IASLPAVCGF IGGVLGGVIS 300
  301 DWLLRRGNSL TFSRKLPIVC GLLLSTTMVF CNYVDAEWMV VGFMTLAFFG KGIGALGWAV 360
  361 VADTSPKQIA GLSGGLFNTF GNIASITTPI VIGYIISATG SFKWALVYVG ANALVAVFSY 420
  421 LVIVGPIKRI ELRDAAPKPH AEPATDGELA SSRH