YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPE24_MYCTO
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.66
Transmembrane Helix	12	31	0.54
Non-Cytoplasmic	32	40	0.43
Transmembrane Helix	41	75	0.59
Cytoplasmic	76	149	0.52
Transmembrane Helix	150	168	0.65
Non-Cytoplasmic	169	177	0.44
Transmembrane Helix	178	202	0.72
Cytoplasmic	203	475	0.59
Transmembrane Helix	476	510	0.52
Non-Cytoplasmic	511	512	0.40
Transmembrane Helix	513	539	0.53
Cytoplasmic	540	540	0.27
Transmembrane Helix	541	567	0.57
Non-Cytoplasmic	568	568	0.25
Transmembrane Helix	569	593	0.56
Cytoplasmic	594	594	0.23
Transmembrane Helix	595	614	0.54
Non-Cytoplasmic	615	616	0.38
Transmembrane Helix	617	645	0.59
Cytoplasmic	646	651	0.40
Transmembrane Helix	652	674	0.63
Non-Cytoplasmic	675	689	0.59
Transmembrane Helix	690	712	0.64
Cytoplasmic	713	721	0.54
Transmembrane Helix	722	743	0.75
Non-Cytoplasmic	744	817	0.39
Transmembrane Helix	818	840	0.65
Cytoplasmic	841	986	0.69
Transmembrane Helix	987	1007	0.52
Non-Cytoplasmic	1008	1043	0.49
Transmembrane Helix	1044	1066	0.46
Cytoplasmic	1067	1076	0.51
Transmembrane Helix	1077	1099	0.79
Non-Cytoplasmic	1100	1105	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSVLPPEI NSALIFAGAG PEPMAAAATA WDGLAMELAS AAASFGSVTS GLVGGAWQGA  60
   61 SSSAMAAAAA PYAAWLAAAA VQAEQTAAQA AAMIAEFEAV KTAVVQPMLV AANRADLVSL 120
  121 VMSNLFGQNA PAIAAIEATY EQMWAADVSA MSAYHAGASA IASALSPFSK PLQNLAGLPA 180
  181 WLASGAPAAA MTAAAGIPAL AGGPTAINLG IANVGGGNVG NANNGLANIG NANLGNYNFG 240
  241 SGNFGNSNIG SASLGNNNIG FGNLGSNNVG VGNLGNLNTG FANTGLGNFG FGNTGNNNIG 300
  301 IGLTGNNQIG IGGLNSGTGN FGLFNSGSGN VGFFNSGNGN FGIGNSGNFN TGGWNSGHGN 360
  361 TGFFNAGSFN TGMLDVGNAN TGSLNTGSYN MGDFNPGSSN TGTFNTGNAN TGFLNAGNIN 420
  421 TGVFNIGHMN NGLFNTGDMN NGVFYRGVGQ GSLQFSITTP DLTLPPLQIP GISVPAFSLP 480
  481 AITLPSLTIP AATTPANITV GAFSLPGLTL PSLNIPAATT PANITVGAFS LPGLTLPSLN 540
  541 IPAATTPANI TVGAFSLPGL TLPSLNIPAA TTPANITVGA FSLPGLTLPS LNIPAATTPA 600
  601 NITVGAFSLP GLTLPSLNIP AATTPANITV GAFSLPGLTL PSLNIPAATT PANITVGAFS 660
  661 LPGLTLPSLN IPAATTPANI TVSGFQLPPL SIPSVAIPPV TVPPITVGAF NLPPLQIPEV 720
  721 TIPQLTIPAG ITIGGFSLPA IHTQPITVGQ IGVGQFGLPS IGWDVFLSTP RITVPAFGIP 780
  781 FTLQFQTNVP ALQPPGGGLS TFTNGALIFG EFDLPQLVVH PYTLTGPIVI GSFFLPAFNI 840
  841 PGIDVPAINV DGFTLPQITT PAITTPEFAI PPIGVGGFTL PQITTQEIIT PELTINSIGV 900
  901 GGFTLPQITT PPITTPPLTI DPINLTGFTL PQITTPPITT PPLTIDPINL TGFTLPQITT 960
  961 PPITTPPLTI EPIGVGGFTT PPLTVPGIHL PSTTIGAFAI PGGPGYFNSS TAPSSGFFNS1020
 1021 GAGGNSGFGN NGSGLSGWFN TNPAGLLGGS GYQNFGGLSS GFSNLGSGVS GFANRGILPF1080
 1081 SVASVVSGFA NIGTNLAGFF QGTTS