YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197739091, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	31	0.85
Non-Cytoplasmic	32	39	0.59
Transmembrane Helix	40	57	0.57
Cytoplasmic	58	114	0.68
Transmembrane Helix	115	135	0.70
Non-Cytoplasmic	136	150	0.70
Transmembrane Helix	151	169	0.86
Cytoplasmic	170	443	0.70
Transmembrane Helix	444	465	0.57
Non-Cytoplasmic	466	525	0.49
Transmembrane Helix	526	552	0.69
Cytoplasmic	553	556	0.35
Transmembrane Helix	557	582	0.59
Non-Cytoplasmic	583	596	0.43
Transmembrane Helix	597	617	0.39
Cytoplasmic	618	922	0.68
Transmembrane Helix	923	944	0.58
Non-Cytoplasmic	945	964	0.64
Transmembrane Helix	965	986	0.70
Cytoplasmic	987	993	0.54
Transmembrane Helix	994	1016	0.61
Non-Cytoplasmic	1017	1061	0.54
Transmembrane Helix	1062	1080	0.41
Cytoplasmic	1081	1368	0.58
Transmembrane Helix	1369	1403	0.50
Non-Cytoplasmic	1404	1420	0.55
Transmembrane Helix	1421	1444	0.65
Cytoplasmic	1445	1453	0.43
Transmembrane Helix	1454	1476	0.67
Non-Cytoplasmic	1477	1484	0.56
Transmembrane Helix	1485	1504	0.42
Cytoplasmic	1505	1757	0.70
Transmembrane Helix	1758	1776	0.53
Non-Cytoplasmic	1777	1816	0.41
Transmembrane Helix	1817	1851	0.63
Cytoplasmic	1852	1866	0.43
Transmembrane Helix	1867	1893	0.68
Non-Cytoplasmic	1894	1908	0.47
Transmembrane Helix	1909	1929	0.53
Cytoplasmic	1930	2216	0.68
Transmembrane Helix	2217	2251	0.67
Non-Cytoplasmic	2252	2273	0.47
Transmembrane Helix	2274	2297	0.55
Cytoplasmic	2298	2298	0.30
Transmembrane Helix	2299	2326	0.69
Non-Cytoplasmic	2327	2340	0.53
Transmembrane Helix	2341	2365	0.69
Cytoplasmic	2366	2371	0.42
Transmembrane Helix	2372	2395	0.59
Non-Cytoplasmic	2396	2431	0.43
Transmembrane Helix	2432	2454	0.49
Cytoplasmic	2455	2690	0.74
Transmembrane Helix	2691	2714	0.75
Non-Cytoplasmic	2715	2723	0.66
Transmembrane Helix	2724	2746	0.61
Cytoplasmic	2747	2755	0.40
Transmembrane Helix	2756	2779	0.63
Non-Cytoplasmic	2780	2795	0.55
Transmembrane Helix	2796	2817	0.61
Cytoplasmic	2818	3114	0.57
Transmembrane Helix	3115	3137	0.59
Non-Cytoplasmic	3138	3160	0.55
Transmembrane Helix	3161	3183	0.72
Cytoplasmic	3184	3186	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFVVSAPEV NSLRMYLGAG SGPMLAAAAA WDGLADELAV AASWFGSVTS GLADAAWRGP  60
   61 AAVAMARAVA PYLGWLISAT AQAEQAAAQA RVAVATFEAA RAATVHPAIV AANRAVLVSL 120
  121 VSSNLLGFNA PAIAATEAAY ERMWAQDVAA MVGYHAGASA AVSALMPFTQ QLKKLAGLSE 180
  181 RLTSAAAAAA GPPSAAGFNL GLANVGANNV GNGNVGVFNV GFGNLGSYNL GFANLGSDNL 240
  241 GLANLGGHNI GFANTGSNNV GFGNTGSNNV GIGLTGNGQI GFGSFNSGSH NIGLFNSGSG 300
  301 NVGLFNSGTG NFGIGNSGTG NFGLGNTGST NTGWFNTGDV NTGGFNPGSY NTGNFNTGNY 360
  361 NTGSFNAGNY NTGYFNTGDY NTGVANTGNV NTGAFIAGNY SNGVLWRGDY QGLIGADIAL 420
  421 EIPAIPINAQ LFSMPIHQVM VMPGSVMTIP GMRLPFTSIV PFVVYYGPVE LPQSTLTLPT 480
  481 VTITVGGPTT TIDGNLTGMV GGVSIPLIKI PAAPGFGNST TSPSSGFFNA GAGTASGFGN 540
  541 FGGGASGFWN LASATSGLSG FGNVGALGSG VANVGNTISG LYNTSTSNLA TPAFNSGLLH 600
  601 HSVGTMTLNF GLANVGGNNV GGANAGIFNV GLANLGDYNI GFGNLGGDNL GFAHAGSYNI 660
  661 GFANTGSNNL GFANTGDNNI GFANIGSNNI GIGLTGSGQI GFGSLNSGSH NIGLFNSGDG 720
  721 NIGLFNSGSG NFGIGNAGTG NWGIGNSGAG NFGIGNAGST NTGLFNSGDL NTGSLNPGSY 780
  781 NTGSVNTGSV NTGGFNAGNY NTGYFNTGDY NTGMANTGNI NTGAFISGNH SNGLLWRGDN 840
  841 QGLIDLAIGV DIPEIPIVSV DVNIPIHIPI TASFTDIVYS GLDLPPNTAV TVIFFGPVDI 900
  901 DPFTVPVIRI TGPTPVVMVG GPTTAINIGA TVGVDAINIP IIHIPATPGF GNSTGGLSSG 960
  961 FFNSGAGSAS GFGNFGGAAS GFMNLVSTTS GMSGFLNVGA LGSGVANVGN TISGIYNVGT1020
 1021 SDLSTPAVNS GLANIGTNIA GLLRDGAGTA AINLGLANHG NLNVGFASLG GFNFGGATIG1080
 1081 HNNVGIGNTG IFDVGLANLG SYNIGFGNLG DDNLGFGNFG SYNIGFGNVG NDNLGFANAG1140
 1141 GGNIGFANTG SNNVGFGNTG SNNVGIGLTG NGQIGFGSFN SGSGNIGLFN SGSNNIGFFN1200
 1201 SGSGNFGIAN SGSFNTGIGN TGNTNTGLFN SGDVNTGAFN PGSFNTGSFN TGSFNTGGFN1260
 1261 PGNTNTGYLN IGNYNTGIAN TGDVDTGAFI TGNYSNGLFL SGDYQGLVGL NLVIDMPLPI1320
 1321 SLGVNIPIDI PITASAGNIT LMGVTIPPTG DIVLSSIAGQ RAHFGPITIP NITVVGPTTT1380
 1381 VAIGGPNTAI TITGGGAIRI PLISIPAAPG FGNSTTNPSS GFFNTGAGGA SGFGNFGGAN1440
 1441 SGFWNLASAT SGASGLLNVG ALGSGLANVG TTVSGFYNTS TSDLATPAFN SGLANISTSI1500
 1501 AGLLRDSTGT MVLNLGLANH GTLNVGIANL GDYNIGFANL GSANFGSANI GGNNIGGANT1560
 1561 GIFDIGLANL GSYNIGFGNF GDDNLGFGNL GSYNVGFGNL GNDNLGFANT GSNNIGFANT1620
 1621 GSNNIGIGLT GDGQIGFGSL NSGSGNIGLF NSGSGNIGFF NSGNGNVGIG NTGTANFGLG1680
 1681 NTGSTNTGFF NSGDVNTGIG NTGSFNTGSF NPGDSNTGDF NPGSYNTGLG NTGDVDTGAF1740
 1741 ISGSYSNGFL WSGNYQGLIG LHAALAIPEI ALTFGVDIPI HIPINIDAGV VTLQGFSIVA1800
 1801 AENNIDFTPI IIPTINITLP TAAITVGGPT TSIGITASAG IGSITIPIID IPATSGFGNS1860
 1861 TTSPSSGFFN SGAGSASGFL NVVAGASGIS GYLNVGALGS GVTNVGHTVS GFYNASALDL1920
 1921 VTPAFASGLM RDGMGTMTLN LGLANLGSNN AGFGNTGIFD VGVANLGNYN IGFGNFGDDN1980
 1981 LGFANLGSYN IGVANTGSNN IGFANTGSNN IGIGLTGTGQ IGIGALNSGS GNIGLFNSGD2040
 2041 GNIGFFNSGT GNFGIGNTGT GNFGIGNSGS TSTGLFNSGD GNTGGFNPGN FNTGNFNTGS2100
 2101 FNTGGFNAGN TNTGHFNTGN YNTGIANTGD VSTGAFISGN YSNGILWRGD YQGLIGYSYA2160
 2161 LTIPEIPAHL DVNIPIDIPI TGSFTDLVVD NFTIPIIGFE SFAFSFHIHT EPDIGPIIVP2220
 2221 SFVLSVPTFA IAVGGPTTAI NISATAGLGP ITIPIIDIPA APGIGNSTTS PSSGFFNTGA2280
 2281 GTASGFGNVG GNTSGLWNLA SAASGVSGLL NVGALGSGVA NVGNTISGIY NTSPLDLGTP2340
 2341 AFGSGLANIA GLLQGGAGTT ILDLAGLGNL NVGLANLGGS NFGIGNTGIF NVGFANVGNH2400
 2401 NIGLANLGNY SVGFANSGNY HIGIANTGSA NIGFANTGSG NIGIGLTGTG QIGFGSFNSG2460
 2461 SHNIGLFNSG DGNVGFFNSG TGNVGIGNTG TANFGIANSG SFNTGLGNTG STNTGLFNPG2520
 2521 NVNTGVGNTG SINTGSINTG SFNTGSTNTG SFNLGDHNTG SFNSGDYNTG YFNAGDYNTG2580
 2581 VANTGNVNTG AFISGNYSNG FFWRGDYQGL IGLSTTITIP EIPYRYDLSV PIDIPITGTV2640
 2641 VATTPNSFTI PGFQIRVLLG PAAVLVNEMI GPITIDVNQV IAIDSPIQQT ISMVGTGGFG2700
 2701 PIPIGISIGG TPGFGNSTTG PSSGFFHTGA GHVSGFGNFG AGNMSGSGNF GAGNSGFFNA2760
 2761 GGLGNSGLLN FGALQSGLAN LGNTISGVYN TSTLDLATPA FGSGIANIGA NLAGLFLDNT2820
 2821 GNLTLNFGVA NQGGLNAGIG NLGSVNIGFV NTGDSNLGIG NLGDLNFGGV NIGGNNIGIA2880
 2881 NTGIFDIGLA NLGSYNIGLA NLGDDNLGFG NAGSYNIGFA NFGSDNLGFA NTGSYNIGFA2940
 2941 NTGNNNIGVG LTGNGQIGIG SLNSGSNNIG LFNSGSGNIG FFNSGTGNVG IFNTGTGNFG3000
 3001 LANSGGFNTG IGNAGSTNTG VFNPGDLNTG SFNPGSFNTG GFNPGSGNTG YLNTGDYNTG3060
 3061 VANTGDVDTG AFITGSYSNG FLVSGDYQGL IGLPLLGIPV TPGYFNLTGG PSSGFFNSGA3120
 3121 GSVSGFVNSG AGLSGYLNTG ALGSGVANVG NTISGWLNAS ALDLATPGFL SGIGNFGTNL3180
 3181 AGFFRG