YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29831861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	53	0.73
Transmembrane Helix	54	73	0.92
Cytoplasmic	74	78	0.69
Transmembrane Helix	79	97	0.88
Non-Cytoplasmic	98	103	0.70
Transmembrane Helix	104	125	0.93
Cytoplasmic	126	132	0.78
Transmembrane Helix	133	154	0.87
Non-Cytoplasmic	155	171	0.85
Transmembrane Helix	172	192	0.93
Cytoplasmic	193	221	0.90
Transmembrane Helix	222	243	0.91
Non-Cytoplasmic	244	252	0.80
Transmembrane Helix	253	272	0.60
Cytoplasmic	273	275	0.42
Transmembrane Helix	276	293	0.60
Non-Cytoplasmic	294	299	0.59
Transmembrane Helix	300	320	0.90
Cytoplasmic	321	340	0.78
Transmembrane Helix	341	362	0.94
Non-Cytoplasmic	363	648	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDTLKSTT GASGASAVRR LLLDNGALTA LIVLVVAMSA LSGDFLTTDN LLNIGVQAAV  60
   61 TAILAFGVTF VIVSAGIDLS VGSVAALSAT VLAWTATSHG LPVVVAVALA VATGVACGLV 120
  121 NGFLISYGKL PPFIATLAML SVGRGLSLVI SQGSPIPFPD SVSHLGDTLG GWLPVPVLVM 180
  181 IVMGLITALI LGRTYIGRSM YAIGGNEEAA RLSGLRVKKQ KLAIYALSGL FAAAAGIVLA 240
  241 SRLSSAQPQA AQGYELDAIA AVVIGGASLA GGTGKASGTL IGALILAVLR NGLNLLSVSA 300
  301 FWQQVVIGVV IALAVLLDTL RRKAGATPVA GASSGGKGKQ AMTYVIAAVV AAAVVGAMSF 360
  361 LHNGSSASPT QKMGLSLSTL NNPFFVQIKT GAQEEAKKQG ADLTVTDAQN DASQQANQVQ 420
  421 NFTSSGVGSI IVNPVDSDAA GPAVRSANKA DIPVVGVDRG VNKADTAALV ASDNVAGGRL 480
  481 GAKALAEKLG GKGRIVILQG LAGTSASRER GAGFAEGLKA YPGIKVVARQ PADFDRTKGL 540
  541 DVMTNLLQAH PDVQGVFAEN DEMALGAIKA LGAKAGKSVS VVGFDGTPDG LTAVKSGTLY 600
  601 ASVAQQPKEL GRIAVQNALR AAEGKKVDKT VKVPVKVVTA KNVAAFGG