YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA14_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETRRRFVI SSVLSVSLIY LCLSTCHVSA FDFGRRQLRF NTDGRFKILQ VSDMHYGFGK  60
   61 ETQCSDVSPA EFPYCSDLNT TSFLQRTIAS EKPDLIVFSG DNVYGLCETS DVAKSMDMAF 120
  121 APAIESGIPW VAILGNHDQE SDMTRETMMK YIMKLPNSLS QVNPPDAWLY QIDGFGNYNL 180
  181 QIEGPFGSPL FFKSILNLYL LDGGSYTKLD GFGYKYDWVK TSQQNWYEHT SKWLEMEHKR 240
  241 WPFPQNSTAP GLVYLHIPMP EFALFNKSTE MTGVRQESTC SPPINSGFFT KLVERGEVKG 300
  301 VFSGHDHVND FCAELHGINL CYAGGAGYHG YGQVGWARRV RVVEAQLEKT MYGRWGAVDT 360
  361 IKTWKRLDDK NHSLIDTQLL WTKNTTLEPN FGFSCSTIPQ H

Type	Start	End	Confidence
Signal Peptide	1	30	0.79
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	401	0.99