YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21225257, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.99
Transmembrane Helix	33	52	0.93
Non-Cytoplasmic	53	68	0.77
Transmembrane Helix	69	90	0.88
Cytoplasmic	91	97	0.86
Transmembrane Helix	98	120	0.89
Non-Cytoplasmic	121	127	0.66
Transmembrane Helix	128	149	0.89
Cytoplasmic	150	158	0.81
Transmembrane Helix	159	179	0.94
Non-Cytoplasmic	180	186	0.83
Transmembrane Helix	187	209	0.90
Cytoplasmic	210	216	0.95
Transmembrane Helix	217	239	0.91
Non-Cytoplasmic	240	244	0.87
Transmembrane Helix	245	268	0.91
Cytoplasmic	269	284	0.86
Transmembrane Helix	285	306	0.91
Non-Cytoplasmic	307	324	0.84
Transmembrane Helix	325	345	0.91
Cytoplasmic	346	352	0.83
Transmembrane Helix	353	371	0.96
Non-Cytoplasmic	372	381	0.77
Transmembrane Helix	382	403	0.90
Cytoplasmic	404	418	0.85
Transmembrane Helix	419	439	0.91
Non-Cytoplasmic	440	494	0.92
Transmembrane Helix	495	514	0.95
Cytoplasmic	515	714	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRCDRDRVT VAEESPRTVA TQPPVLDRRR RNVVFVTIML GMLLAALDQT IVGTALPTIV  60
   61 SDLGGAEHMS WVVTSYLLAE TVATVLVGKF GDLFGRKVVF QVSAVVFITG SFLCGLATNM 120
  121 PLLILWRAVQ GVGAGGLMVT AMALIADVIP LRERGKYQGA IGAVFGVATV IGPLLGGLFT 180
  181 DHLSWRWAFY VNVPIAVVVV IAAARTIPVV KSAARPVIDY LGIALVAVGA SALILATSWG 240
  241 GNEYAWGSAV IIGLFAGGLI ALGLFCWVET RAAEPMLPMR LFANPVFTVC SILSFIVGFA 300
  301 MLGALTYLPT YLQYVDGDSA TVSGVRTLPM VAGLLIASVF SGNVVSKTGR YRLFPIAGTL 360
  361 VMGVGLYLMS LMGPDTGAGL ESLYMFVLGT GIGLSMQVLT IAVQNTVEYS DLGTATSGVT 420
  421 FFRTLGSSFG TAVFGTIYAN ALGPNLRDGV AAAARTGAAD PSVIAGASTS PEGVHRLPPP 480
  481 ASAPIVGAYA DTIQTVFLWT VPVAALGFLV ALFLKQVQLR DSARAGSTDM GEGFASPHDA 540
  541 SSRRTLEASV GKIIGGTELD TARRIVADSD TRLDVAGAWA VMQVDLFTRL VGHASLGLIA 600
  601 ARRRLPPEVL LPVFDRMVEE GFLTRHGSLL SHTDAGAREA LVIGRAWATW LEDRVERDIG 660
  661 RPTDTELRAA VDAIAKRLLV EDLSSGLPQR VRQAGAEDRP RSSPRSPDAR TGVG