YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7481439
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTQLSVVV PCFNEAAVIE RFHSAVENVL GPSNLDYEIC YVDDGSTDRT PDLIRQLGFA  60
   61 DPRVRYVVLS RNFGKESAML AGLRMSRGQA VVLMDADLQH PPELIPRMLE LHARGYDQVV 120
  121 PRRDRAGDGV VRTLLSRGYY ALVRHLMDVK VLDGAGDFRL LSRHAVDTVL SLPETNRFSK 180
  181 GIFSWIGFST ATFTYRNAQR LAGSSKWGSR RLLNYGIDGL LSFNNRPLRL AIYTGFWCLL 240
  241 VAVVYATWVV IDVAVHGTAV PGYATLLMVV VALGGVQLIT LGVIGEYVGR IYHEVKRRPP 300
  301 FVVQETDEYP SQGPHPSSGG TLATPGTLHT TARQFVTFVA IGFVNTAVYL GLFAALNNWI 360
  361 PYLVAHALGY TVSVLCSFLL NSYITCRTRP TWRALIRYPL SSIFNLVVSG ALLYVAVSQL 420
  421 GMDKNVAALV AGVVVTPVSF VLARWAINSG RQPGSTKVAA GGVRRTAPET NQDDPTLG

Type	Start	End	Confidence
Cytoplasmic	1	229	0.76
Transmembrane Helix	230	251	0.90
Non-Cytoplasmic	252	263	0.74
Transmembrane Helix	264	288	0.87
Cytoplasmic	289	334	0.97
Transmembrane Helix	335	356	0.93
Non-Cytoplasmic	357	362	0.86
Transmembrane Helix	363	384	0.93
Cytoplasmic	385	394	0.89
Transmembrane Helix	395	417	0.90
Non-Cytoplasmic	418	425	0.83
Transmembrane Helix	426	447	0.94
Cytoplasmic	448	478	0.99