YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6714794, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.86
Transmembrane Helix	22	44	0.85
Non-Cytoplasmic	45	54	0.63
Transmembrane Helix	55	74	0.89
Cytoplasmic	75	79	0.59
Transmembrane Helix	80	98	0.81
Non-Cytoplasmic	99	103	0.75
Transmembrane Helix	104	126	0.92
Cytoplasmic	127	133	0.77
Transmembrane Helix	134	155	0.83
Non-Cytoplasmic	156	172	0.81
Transmembrane Helix	173	193	0.93
Cytoplasmic	194	222	0.90
Transmembrane Helix	223	244	0.92
Non-Cytoplasmic	245	258	0.76
Transmembrane Helix	259	275	0.67
Cytoplasmic	276	276	0.30
Transmembrane Helix	277	294	0.59
Non-Cytoplasmic	295	300	0.33
Transmembrane Helix	301	322	0.83
Cytoplasmic	323	343	0.47
Transmembrane Helix	344	365	0.92
Non-Cytoplasmic	366	651	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDTLKSKP GAQGATGGLR RLLLDNGALT ALIVLVVVMS ALSGDFLTAD NLLNVGVQAA  60
   61 VTAILAFGVT FVIVSAGIDL SVGSVAALSA TVLAWSATEA GMPVALAVLL SVLTGIACGL 120
  121 VNGFLISYGK LPPFIATLAM LSVGRGLSLV ISQGSPIAFP DSVSHLGDTL GGWLPVPVLV 180
  181 MIVMGLITAF VLGRTYIGRS MYAIGGNEEA ARLSGLRVKR QKLAIYAFSG LFAAAAGIVL 240
  241 ASRLSSAQPQ AAQGYELDAI AAVVIGGASL AGGTGKASGT LIGALILAVL RNGLNLLSVS 300
  301 AFWQQVVIGV VIALAVLFDT LRRKAGAVTP AAGASGGGNR GRQALTYVIA AVVAVAVVGA 360
  361 TSLLHNGSSG GKSQKIGLSL STLNNPFFVQ IRNGAEEEAK KLGVDLTVTD AQNDASQQAN 420
  421 QLQNFVSGSL SAVIVNPVDS DAAGPSVRSA NKDDIPVIAV DRGVNKAETS ALVASDNVEG 480
  481 GELGAKALAE KLGGKGTIVI LQGQAGTSAS RERGAGFAAG LKAYPGIKVV AKQPADFDRT 540
  541 KGLDVMTNLL QAHPDVDGVF AENDEMALGA IKALGSKAGK SVQVVGFDGT PDGLKAVQDG 600
  601 TLYASVAQQP KELGRIAVRN ALRAAEDKKV EQTVKVPVKV VTQQNVAGFE G