YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254029, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.62
Transmembrane Helix	8	29	0.85
Non-Cytoplasmic	30	37	0.51
Transmembrane Helix	38	64	0.69
Cytoplasmic	65	65	0.23
Transmembrane Helix	66	81	0.58
Non-Cytoplasmic	82	132	0.70
Transmembrane Helix	133	152	0.91
Cytoplasmic	153	170	0.67
Transmembrane Helix	171	191	0.94
Non-Cytoplasmic	192	199	0.63
Transmembrane Helix	200	224	0.84
Cytoplasmic	225	233	0.58
Transmembrane Helix	234	252	0.69
Non-Cytoplasmic	253	267	0.72
Transmembrane Helix	268	290	0.91
Cytoplasmic	291	297	0.77
Transmembrane Helix	298	319	0.73
Non-Cytoplasmic	320	329	0.48
Transmembrane Helix	330	351	0.80
Cytoplasmic	352	352	0.25
Transmembrane Helix	353	367	0.27
Non-Cytoplasmic	368	373	0.40
Transmembrane Helix	374	395	0.92
Cytoplasmic	396	497	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFLQRIGK ALMLPIAVLP AAGLLLRLGQ EDVFNIPVMA QAGAAIFDNL ALIFAIGVAI  60
   61 GLSVDGSGAA GLAGAIGYLV LQNTTNALSK TYSAAELNDK LKSVQDLVGS VDPTKLADTM 120
  121 TKVSKAAALT PKINMAILGG IIAGVVAGLL YNKFHKIKLP EWLGFFAGKR FVPIITSIVM 180
  181 LLLGLVFGQI WPTIQSGIDA VAHGIVNLGS IGAGLFGLLN RLLIPIGLHH VMNTYFWFVL 240
  241 GDFTNAAGDI VHGDIARFFA KDPSAGMFMT GFFPVMMFGL PAACFAMIAA AKPEKRKMVT 300
  301 GMLGGLALTS FLTGITEPIE FSFMFLSPVL YGIHAVLTGL SLFITTTLGI HDGFSFSAGA 360
  361 IDYVLNFGIA TKPLLLAGIG LIYAAIYFVV FYFLIKKFDL KTPGREDEEE MAEGEEAPVA 420
  421 GSIGETYVAA LGGKENLTVI DNCATRLRLQ VKDAGQVNEA ALKRAGAKGV MKLSNTSVQV 480
  481 IVGTNVESVA DDMKKHV