YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254344, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.46
Transmembrane Helix	15	36	0.89
Cytoplasmic	37	45	0.41
Transmembrane Helix	46	72	0.83
Non-Cytoplasmic	73	92	0.53
Transmembrane Helix	93	114	0.93
Cytoplasmic	115	129	0.70
Transmembrane Helix	130	150	0.92
Non-Cytoplasmic	151	163	0.71
Transmembrane Helix	164	183	0.91
Cytoplasmic	184	189	0.60
Transmembrane Helix	190	211	0.88
Non-Cytoplasmic	212	240	0.81
Transmembrane Helix	241	264	0.85
Cytoplasmic	265	280	0.85
Transmembrane Helix	281	303	0.81
Non-Cytoplasmic	304	311	0.78
Transmembrane Helix	312	334	0.84
Cytoplasmic	335	342	0.56
Transmembrane Helix	343	362	0.88
Non-Cytoplasmic	363	375	0.78
Transmembrane Helix	376	400	0.89
Cytoplasmic	401	409	0.88
Transmembrane Helix	410	430	0.91
Non-Cytoplasmic	431	433	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLSKHKTS IKTEIMAGII TFLTMAYIIV VNPVILGDAG VPFEQAFTAT IIAAVVGTLF  60
   61 MAIFTNLPIA IAPGMGLNAY FSYSVVKAHE GMTFAIAFSA VFVAGMILIL LSFTSFRTKL 120
  121 MEAIPENLKH AITAGIGLFI AFIGLRLTGI VTKNEANLVG LGDLHSAPVL LALAGLGITI 180
  181 VLMSLNVNGA LFIGMLLTGI IAFFTGQLTF SNGVTSMPGL PEGIIVSNPI TAVSDVINYG 240
  241 LYGVVFSFFL VTLFDTTGTL LGVAQQGGFM KDGKLPKAGR ALLSDSFSAT IGSMFGTTPS 300
  301 TAYIESSAGV AAGGRTGLTT VTVAVLFALA AFFGPLVSAV SGVSAITAPS LIIVGSLMMG 360
  361 SVRHIDWDAF DEAFPAFLVI LSMPLTSSIA TGIALGFISY PLMKVAKGKF RAVHPLVYVF 420
  421 GILFAYQLIF LPH