YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261469, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.77
Transmembrane Helix	7	25	0.95
Cytoplasmic	26	32	0.68
Transmembrane Helix	33	47	0.82
Non-Cytoplasmic	48	52	0.77
Transmembrane Helix	53	72	0.88
Cytoplasmic	73	79	0.83
Transmembrane Helix	80	100	0.92
Non-Cytoplasmic	101	105	0.72
Transmembrane Helix	106	126	0.67
Cytoplasmic	127	137	0.60
Transmembrane Helix	138	156	0.63
Non-Cytoplasmic	157	188	0.52
Transmembrane Helix	189	210	0.78
Cytoplasmic	211	227	0.45
Transmembrane Helix	228	249	0.83
Non-Cytoplasmic	250	270	0.55
Transmembrane Helix	271	290	0.53
Cytoplasmic	291	300	0.89
Transmembrane Helix	301	320	0.94
Non-Cytoplasmic	321	326	0.73
Transmembrane Helix	327	345	0.93
Cytoplasmic	346	359	0.93
Transmembrane Helix	360	382	0.91
Non-Cytoplasmic	383	388	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAYGSFYFF AIVGILLIPT IIAGLKGKML RKYNAVLTLV MIAIIFSDKP KQAIMLAAFI  60
   61 IWQYALIKGY LLLRKQNNST FMFCIAVILS ILPLILAKIA PFVPELHFIV FAGMSYVTFR 120
  121 AVQMVFEVRD NLIKELSFFN FWEFVLFFPA ISSGPIDRYR RFQKDIQKPP SAEEYQNLLY 180
  181 TGLNRIFQGF LYKFIIAHLI TTYLVKAVFA NQDTLLSNVI FMYATSMQLF FDFAGYSAFV 240
  241 IGISYMMGIK TPENFNKPFL SRNIKDFWNR WHMSLSFWFR DFIYMRFVFF ATKKKLIKNR 300
  301 YTISYIGAFL NFFIMGIWHI QGSAVAQYVI YGLYHAALFI LFDIFERKNK KHKFWPNNKF 360
  361 THVLAIVITF HVVCFGFLIF SGHLNRYF