YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255892, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	35	0.93
Non-Cytoplasmic	36	40	0.84
Transmembrane Helix	41	61	0.88
Cytoplasmic	62	65	0.84
Transmembrane Helix	66	87	0.92
Non-Cytoplasmic	88	94	0.78
Transmembrane Helix	95	114	0.95
Cytoplasmic	115	120	0.85
Transmembrane Helix	121	142	0.91
Non-Cytoplasmic	143	156	0.85
Transmembrane Helix	157	177	0.89
Cytoplasmic	178	183	0.87
Transmembrane Helix	184	205	0.90
Non-Cytoplasmic	206	228	0.90
Transmembrane Helix	229	253	0.89
Cytoplasmic	254	306	0.59
Transmembrane Helix	307	328	0.86
Non-Cytoplasmic	329	334	0.35
Transmembrane Helix	335	356	0.88
Cytoplasmic	357	366	0.43
Transmembrane Helix	367	388	0.93
Non-Cytoplasmic	389	395	0.44
Transmembrane Helix	396	417	0.71
Cytoplasmic	418	440	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQHPFKIAS LGMQHMLAMY AGAIIVPLIV GGGLGLNQKE LTYLVSIDLL MCGVATILQA  60
   61 LSNRFFGIGL PVVLGCTFTA VGPMIAIGKQ YGVSSIYGAI IAAGLFVVIF AKLFGKLVKL 120
  121 FPPVVTGSVV TVIGVTLVPA AINDMAGGVG SKDFGSLENL ALAFGVLLFI IIMYRFFDGF 180
  181 IRSISILLGL LFGTIVAAFM GKVSLQAVGE ADWFHGIQPF YFGTPTFELT PIITMILVAC 240
  241 VGIVEATGVY FALSDICNKK IGEKELTKGY RAEGLAMVLG GIFNAFPYTT YSQNVGLVQL 300
  301 TGVRNRVIIY TCGGMLIALG FIPKIAAITT IIPKSVLGGA MLAMFGMVMA YGIKMLSSVD 360
  361 FGRQENLLIV ACSVGIGLGV TVVPTLFSQL PESIRILTDN GIVLGSASAV LLNIVFNMVP 420
  421 QRKVKVKDEP VPMQSAVREA