YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262159, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	32	0.91
Non-Cytoplasmic	33	39	0.78
Transmembrane Helix	40	61	0.91
Cytoplasmic	62	72	0.75
Transmembrane Helix	73	91	0.94
Non-Cytoplasmic	92	96	0.89
Transmembrane Helix	97	118	0.93
Cytoplasmic	119	129	0.81
Transmembrane Helix	130	152	0.91
Non-Cytoplasmic	153	159	0.78
Transmembrane Helix	160	179	0.94
Cytoplasmic	180	202	0.94
Transmembrane Helix	203	224	0.93
Non-Cytoplasmic	225	238	0.89
Transmembrane Helix	239	258	0.91
Cytoplasmic	259	266	0.79
Transmembrane Helix	267	287	0.91
Non-Cytoplasmic	288	291	0.83
Transmembrane Helix	292	315	0.88
Cytoplasmic	316	323	0.88
Transmembrane Helix	324	345	0.92
Non-Cytoplasmic	346	354	0.71
Transmembrane Helix	355	377	0.93
Cytoplasmic	378	389	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSPNFQLSL QTSNLIIGFM VWVILSSLMP YIKVDIPLTA GQISMVTAVP VILGSVLRIP  60
   61 IGYWTNRFGA RKLFFISFIL LLFPVFYISV ANSMMDLIIG GLFVGIGGAV FSVGVTSLPK 120
  121 YFPKESHGFV NGIYGVGNAG TAITSFLAPV IATSVGWRTT VQCYLVLLAA FALMNFLLGD 180
  181 RKEKKVNTPL MEQIKGVYKN EKLWFLCIFY FLTFGSFVAF TVYLPNFLVS HFGLEKVDAG 240
  241 MRTAGFIVLA TIMRPIGGWL GDKFNPFKIL IFVFIGLTLS GIILSFMPSM NVYTFGCLLV 300
  301 AFCAGIGNGT IFKLVPMYFS EQAGIVNGLV SALGGLGGFF PPLILTLLFQ LTGHYAIGFM 360
  361 ALSEVALACL IITVWMYSQE KLLVMLKNH