YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265099, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.78
Transmembrane Helix	4	22	0.90
Cytoplasmic	23	31	0.68
Transmembrane Helix	32	54	0.85
Non-Cytoplasmic	55	61	0.64
Transmembrane Helix	62	82	0.80
Cytoplasmic	83	88	0.56
Transmembrane Helix	89	110	0.91
Non-Cytoplasmic	111	163	0.46
Transmembrane Helix	164	184	0.70
Cytoplasmic	185	191	0.52
Transmembrane Helix	192	211	0.91
Non-Cytoplasmic	212	240	0.58
Transmembrane Helix	241	265	0.89
Cytoplasmic	266	272	0.51
Transmembrane Helix	273	294	0.87
Non-Cytoplasmic	295	331	0.50
Transmembrane Helix	332	356	0.85
Cytoplasmic	357	369	0.50
Transmembrane Helix	370	392	0.89
Non-Cytoplasmic	393	393	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVMFLVGL LVVFVLGFLI SADRKKIKYK PIAIMLVIQL ALSYFLLNTQ VGYILVKGIS  60
   61 DGFGALLGYA EAGIVFVFGG LVNKGEVSFF LTALLPIVFF AVLIGILQHF KILPIFIRAI 120
  121 GTLLSKVNGL GKLESYNAVA AAIVGQAEVF ITVKDQLSKI PKHRLYTLCA SSMSTVSMSI 180
  181 VGSYMKMIEP KYVVTALVLN LFSGFIIIHI INPYDITEEE DTLKLENKKK QSFFEMLSEY 240
  241 IMLGFTIAIT VAAMLLGFVA LITAINSLFD SMFGITFQAI LGYIFSPLAF VMGIPQAEMV 300
  301 TAGQIMATKL VSNEFVAMLD LGKVAGDLSA RTVGILSVFL VSFANFSSIG IIAGATKGID 360
  361 ENQSNVVSSF GLRLVYGATL VSILSAIIVG VML