YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLWGIGGV IGVLAIAFLL SSNRKAINWR TILIALALQM SFSFIVLRWD AGKAGLKHAA  60
   61 DGVQGLINFS YEGIKFVAGD LVNAKGPWGF VFFIQALLPI VFISSLVAIL YHFGIMQRFV 120
  121 SVVGGALSKL LGTSKAESLN SVTTVFLGQT EAPILIKPYL ARLTNSEFFA IMVSGMTAVA 180
  181 GSVLVGYAAM GIPLEHLLAA AIMAAPSSLL IAKLIMPETE KVDNNVELST EREDANVIDA 240
  241 AARGASEGMQ LVINVAAMLM AFIALIALLN GLLGLIGSLF DIKLSLDLIF GYLLSPFAIL 300
  301 IGVSPGEAVQ AASFIGQKLA INEFVAYANL GPHMAEFSDK TNLILTFAIC GFANFSSIAI 360
  361 QLGVTGTLAP TRRKQIAQLG IKAVIAGTLA NFLNAAVAGM MFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.84
Transmembrane Helix	4	22	0.88
Cytoplasmic	23	28	0.73
Transmembrane Helix	29	49	0.87
Non-Cytoplasmic	50	90	0.82
Transmembrane Helix	91	113	0.90
Cytoplasmic	114	167	0.77
Transmembrane Helix	168	190	0.91
Non-Cytoplasmic	191	251	0.50
Transmembrane Helix	252	277	0.83
Cytoplasmic	278	287	0.43
Transmembrane Helix	288	309	0.79
Non-Cytoplasmic	310	342	0.66
Transmembrane Helix	343	365	0.89
Cytoplasmic	366	378	0.78
Transmembrane Helix	379	401	0.88
Non-Cytoplasmic	402	403	0.77