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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TSP3A_DANRE
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQMFVHIWV SLVVLMSVWS AQSDKKQDVP VIDVLGLEDV KQTVAAVEKL SLALKTLSDV  60
   61 YVMSTFRLPP KLGGVLLGLY NKQDNKKYLE VAIMSKINKV LVRYVREDGK LHTVNMQSPN 120
  121 VADGRPQSLI LRVGGLRREY LSLELYVNCR LADSAQRLPP LVDLPRDAEL VEIRNGHKAY 180
  181 ARMQGSMDTL KLALGGTVAQ AGALTDCPFQ GDASSYNIVN GEVNSILGDH TKALIGQLII 240
  241 FNQILGELRE DIREQVKEMS LVRNAILECQ MCGFHEPRSR CQPNPCFKGV SCMETFEYPG 300
  301 YRCGPCPDGM TGNGTHCQDI DECSEAQPCY TPGACVNTAR GFTCESCPPG MWGPPLSGVG 360
  361 VEYAKSHRQE CSDIDECVDL ANACTPNSVC INIIGSFRCG QCKTGYVGNQ TAGCFPRKSC 420
  421 SSLSFNPCDA NAHCVMQRNG DVSCACNVGW AGNGHTCGKD TDIDGYPDRS LPCMDNHKHC 480
  481 RQDNCVYTPN SGQEDADNDG IGDQCDEDAD GDGIKNVEDN CRLVSNKDQQ NSDTDSFGDA 540
  541 CDNCPTVPNI DQKDTDSNGE GDACDDDIDG DGIQNVLDNC PKVPNPMQTD RDRDGVGDAC 600
  601 DSCPEISNPM QTDVDNDLVG DVCDTNQDTD GDGHQDTRDN CPDIPNSSQL DSDNDGIGDD 660
  661 CDEDDDNDGI PDNHAINGIG PDNCRLISNP NQKDSDSNGV GDVCENDFDN DSVMDLVDVC 720
  721 PESAEVTLTD FRAYQTVILD PEGDAQIDPN WVVLNQGMEI VQTMNSDPGL AVGYTAFNGV 780
  781 DFEGTFHVNT VTDDDCAGSI FGYQDSSSFY VVMWKQTEQT YWQSIPFRAM AEPGLQLKAV 840
  841 KSRTGPGEFL RNALWHAGDT DGEVKLLWKD PRNVGWLDKT SYRWQLSHRP QVGYIRVKLY 900
  901 EGSEMVADSD VVIDTSMRGG RLGVFCFSQE NIIWSNLRYR CNDTVPEDFS SHRKQVLMHI 960
  961 KV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle