YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62079193, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLPGDLAG DLERSLPALA SLGTSLSHSQ SLSSHFIPPP LEKRRVVSDV RRTFCLFVTF  60
   61 DLLFISLLWI IELNTNTGIR KNLEQEVIHY SFQSSFFDIF VLAFFRFSGL LLGYAVLRLQ 120
  121 HWWVIAITTL VSSAFLIVKV ILSELLSKGA FGYLLPIVSF VLAWLETWFL DFKVLPQEAE 180
  181 EERWYLAAQA AVARGPLLFS GALSEGQFYS PPESFAGSDS ESDEEVAGKK SFSAQEREYI 240
  241 RQGKEATAVV DQILAQEENW KLERRNEYGD TVYTIEVPFH GKTFILKTFL PCPAELVYQE 300
  301 VILQPERMVL WNKTVTACQI LQRVEDNTLV SYDVSSGAAG GVVSPRDFVN VRRIERRRDR 360
  361 YLSSGIATTH CSKPPTHKYV RGENGPGGFI VLKSASNPRV CTFVWILNTD LKGRLPRYLI 420
  421 HQSLGATMFE FAFYLRQRVG ELGARA

Type	Start	End	Confidence
Cytoplasmic	1	52	0.90
Transmembrane Helix	53	71	0.95
Non-Cytoplasmic	72	93	0.82
Transmembrane Helix	94	115	0.82
Cytoplasmic	116	121	0.70
Transmembrane Helix	122	142	0.94
Non-Cytoplasmic	143	149	0.75
Transmembrane Helix	150	170	0.91
Cytoplasmic	171	184	0.79
Transmembrane Helix	185	203	0.58
Non-Cytoplasmic	204	446	0.73