YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52003251, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLTKH TIKLNLESSQ KENVIEELVS VLDQAGKLND KEGYKEAVIN REKQSSTGIG  60
   61 EGIAIPHAKT ASVKEPAIAF GRSKGGVDYE SLDGQPSHLV FMIAATDGAN NTHLEALSRL 120
  121 STLLMREEIR KQLLEASSED EIIDIINQHD KDDDEEEEQA EEAPAPSAKG KILAVTACPT 180
  181 GIAHTFMAAD ALKEKAKELG VDIKVETNGS SGIKNGLTAQ EIEDAVAIIV AADKQVEMER 240
  241 FQGKHVIEVP VTAGIRRPQE LIEQALKQDA PIYQGKGGGA TASEDGAAKG KGGGFYKHLM 300
  301 SGVSNMLPFV VGGGILVAIS FFWGINATKP GDPTYNEFAA VLNNIGGTNA LGLIVAVLAG 360
  361 FIAMSIADRP GFAPGMVGGF MATQAGAGFL GGLIAGFLAG YIVVLLKKVF AGLPQVLDGL 420
  421 KPVLLYPLFG IFLTGIIMQY VVNTPVKYIM DGMTHWLEGL GTGNLVVMGI VLGGMMAIDM 480
  481 GGPINKAAFT FGIAMIEAGN FGPHAAIMAG GMVPPLGIAL ATTFFKNKFS KRDREAGITN 540
  541 YVMGLSFITE GAIPFAAADP ARVIPACIIG SAVAGGLSQF FHVTLQAPHG GIFVLFFTTN 600
  601 HALLYLLSIL IGAVVTALIL GVLKKPVPTE K

Type	Start	End	Confidence
Cytoplasmic	1	304	0.91
Transmembrane Helix	305	325	0.93
Non-Cytoplasmic	326	344	0.83
Transmembrane Helix	345	367	0.88
Cytoplasmic	368	379	0.76
Transmembrane Helix	380	405	0.83
Non-Cytoplasmic	406	422	0.86
Transmembrane Helix	423	443	0.93
Cytoplasmic	444	459	0.74
Transmembrane Helix	460	481	0.86
Non-Cytoplasmic	482	503	0.83
Transmembrane Helix	504	525	0.93
Cytoplasmic	526	562	0.76
Transmembrane Helix	563	583	0.85
Non-Cytoplasmic	584	601	0.72
Transmembrane Helix	602	623	0.94
Cytoplasmic	624	631	0.78