YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58801516, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVLAASSP NPPPASGGGT APAGAGLVTV PPGFTMPPVS GVPPSSGTQG QPGTDSESSL  60
   61 PNPGTFEECH RKCKEVFPVQ MEGVRLVVNK GLSNHFQVSH TITLSTLGDS GYRFGSTYVG 120
  121 SKQTGPAESF PVMVGDMDNT GSLNAQVIHQ LTNRVRSKIA IQTQQHKFVN WQCDGEYRGD 180
  181 DFTAAVTLGN PDVLVGSGIL VAHYLQSLSP SLVLGGELVY HKRPGEEGTV TSLVGRYTGS 240
  241 NYVATLTVGG AGAHASYYHK ANDQLQVGVE FEASTRMQET SVSFGYQLDV PKANLLFKGS 300
  301 LDSNWVVGAT LEKKLLPLPL SLALGAFLNH RKNKFQCGFG VTIG

Type	Start	End	Confidence
Signal Peptide	1	17	0.47
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	344	0.97