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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9967846, gi|4...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDGCPQLPL PPHGYYPSLR GTDNRLTHRR QTVLREKGRR LANRGPAYMF NDHSTTLSIE  60
   61 EERFLDAAEY GNIPVVRKML EECLSLNVNC VDYMGQNALQ LAVANEHLEI TELLLKKENL 120
  121 SRVGDALLLA ISKGYVRIVE AILSHPAFAE GKRLATSPSQ SELQQDDFYA YDEDGTRFSH 180
  181 DVTPIILAAH CQEYEIVHTL LRKGARIERP HDYFCKCSEC NQKQKHDSFS HSRSRINAYK 240
  241 GLASPAYLSL SSEDPVMTAL ELSNELAVLA NIEKEFKNDY KKLSMQCKDF VVGLLDLCRN 300
  301 TEEVEAILNG DVETCQSGDQ GRPNLSRLKL AIKYEVKKFV AHPNCQQQLL SIWYENLSGL 360
  361 RQQTMAVKFL VVLGVAIGLP FLALIYWCAP CSKMGKIMRG PFMKFVAHAA SFTIFLGLLV 420
  421 MNAADRFEGT KLRPNETSTD NAKQLFRMKT SCFSWMEMLI ISWVIGMIWA ECKEIWAQGP 480
  481 KEYLFELWNM LDFGMLAIFA ASFIARFMAF WHASKAQSII DANDTLKDLT KVTLGEDVKY 540
  541 YNLARIKWDP SDPQIISEGL YAIAVVLSFS RIAYILPANE SFGPLQISLG RTVKDIFKFM 600
  601 VIFIMVFVAF MIGMFNLYSY YIGAKQNEAF TTVEESFKTL FWAIFGLSEV KSVVINYNHK 660
  661 FIENIGYVLY GVYNVTMVIV LLNMLIAMIN SSFQEIEDDA DVEWKFARAK LWFSYFEEGR 720
  721 TLPVPFNLVP SPKSLLYLLL KFKKWGFELF QGHKKAFQED AEMNKRNEEK KFGILGSHED 780
  781 LSKLSVDKKQ LGQNKQSSIR SSEDFHLNSF NNPPRQYQKI MKRLIKRYVL QAQIDKESDE 840
  841 VNEGELKEIK QDISSLRYEL LEEKSQNTED LAELIRKLGE KLSSEPKQEE INR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle