YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74316443, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	39	0.90
Non-Cytoplasmic	40	65	0.88
Transmembrane Helix	66	92	0.74
Cytoplasmic	93	116	0.91
Transmembrane Helix	117	138	0.90
Non-Cytoplasmic	139	145	0.86
Transmembrane Helix	146	166	0.96
Cytoplasmic	167	174	0.88
Transmembrane Helix	175	196	0.92
Non-Cytoplasmic	197	205	0.80
Transmembrane Helix	206	229	0.92
Cytoplasmic	230	263	0.96
Transmembrane Helix	264	286	0.90
Non-Cytoplasmic	287	308	0.92
Transmembrane Helix	309	329	0.95
Cytoplasmic	330	364	0.93
Transmembrane Helix	365	384	0.94
Non-Cytoplasmic	385	390	0.81
Transmembrane Helix	391	410	0.90
Cytoplasmic	411	437	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPKTGLNK FGDLKRRLLF LLGALIVYRI GTFIPVPGID PLVLDQLFKS QQGGILGMFN  60
   61 MFSGGALSRF SVFALGIMPY ISASIIVQLM TTVSPQLEAL KKEGEAGRRK ITQYTRYGTL 120
  121 FLAVFQALGI AIALEAQAGL VLDPGMAFRL ITVVTLTAGT MFLMWLGEQI TERGLGNGIS 180
  181 IIIFAGIAAG LPSAIGGTLE LTRTGAFSIP LVLMLFVGVL LVTALVVFVE RGQRKILVNY 240
  241 AKRQVGKMVV GGQSSHLPLK LNMAGVIPPI FASSIILFPA TLAGWFGSGE NMGWLKDVGA 300
  301 TLSPGQPVYV LLYALAIIFF CFFYTALVFN PKETADNLKK SGAFVPGIRP GDQTARYIDK 360
  361 ILTRLTLVGA IYITLVCLLP EFLILKWNVP FYFGGTSLLI IVVVTMDFMA QVQAYVMSHQ 420
  421 YEGLLKKANF KNGLVGR