YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28261369, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELALVPLEN GGAMTVRGGG EARAGCGQAV GGELQCPPTA ARGAGPKERE PRERGPPRGA  60
   61 DPGARPLPAL PLPRRLPPED EEGDGDPALG LAEDQVPGPG SGSFHHQRVL INISGLRFET 120
  121 QLGTLAQFPD TLLGDPAKRL RYFDPLRNEY FFDRNRPSFD GILYYYQSGG RLRRPVNVSL 180
  181 DVFADEIRFY QLGDEALERF REDEGFIKEE EKPLPRNEFQ RQVWLIFEYP ESSGSARAIA 240
  241 IVSVLVILIS IITFCLETLP EFRDERELLR HPPGPPHPPG PARGTNGSAA LAPASGPTVA 300
  301 PLLPRTLADP FFIVETTCVI WFTFELLVRF FACPSKAEFS RNIMNIIDVV AIFPYFITLG 360
  361 TELAEQQPGG GGGGQNGQQA MSLAILRVIR LVRVFRIFKL SRHSKGLQIL GKTLQASMRE 420
  421 LGLLIFFLFI GVILFSSAVY FAEADNQETH FSSIPDAFWW AVVTMTTVGY GDMRPVTVGG 480
  481 KIVGSLCAIA GVLTIALPVP VIVSNFNYFY HRETDHEEQA ALKEEQGSQS QGTGLDSGGP 540
  541 RKTSWSKGSL CKAGVSLENA DGARRGSCPL EKCNLKAKSN VDLRRSLYAL CLDTSRETDL 600
  601

Type	Start	End	Confidence
Non-Cytoplasmic	1	235	0.60
Transmembrane Helix	236	259	0.83
Cytoplasmic	260	283	0.53
Transmembrane Helix	284	300	0.37
Non-Cytoplasmic	301	310	0.63
Transmembrane Helix	311	332	0.75
Cytoplasmic	333	342	0.83
Transmembrane Helix	343	361	0.83
Non-Cytoplasmic	362	378	0.74
Transmembrane Helix	379	397	0.79
Cytoplasmic	398	420	0.91
Transmembrane Helix	421	442	0.94
Non-Cytoplasmic	443	456	0.75
Transmembrane Helix	457	471	0.85
Cytoplasmic	472	481	0.62
Transmembrane Helix	482	502	0.91
Non-Cytoplasmic	503	600	0.85