YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67522513, gi|...
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPIPDSPLI TSTWHSKGKH SNSHTVTKDA PQNGHRPRLT LDPVPSLASV VRGSLSWAGS  60
   61 ICSSEDIVSR KKRGFEEELH LKTEDRKQVL YLRMRNAVSA EEWKECACEL DKLEDNNAWK 120
  121 ATFECDEYDP HLVQSRLEQL EAARLSCDVS RMLYLIRTSL SRDLGGMSNA SLYKHTHSGT 180
  181 KNLIDQYITT AVQTISSLVD VSGDNRCDVA ESRYILDQLL AARQAFGRSA LLFSGGATFG 240
  241 MNHIGVLKSL WMANLLPRII SGASAGSIVC AVFCTRTEDE LPALLASFPY GDFSVFDEDD 300
  301 REENILQKTA RFLKHGAFLD ITHLAKVMRN WLGDITFQEA YNRTRRILNI CVSSAGVYEL 360
  361 PKLLNYITAP SVLIWSAVAV SCSVPVVFSP FTLMAKDPLT GEPVPWNDLH KQYIDGSVDG 420
  421 DLPMNRLSEM FNVNHFIVSQ VNPHIVPFLP KDDEPKSVAV PTSRFSRLFH TVSHLAKEEI 480
  481 MHRMAVLTEL GVFPNSFTKS ISIMNQKYSG DINIYPEIHY AHFPRLLKNP TTDFMLKACL 540
  541 CGERATWPKL ARIRNHCAIE LALDSAIQKM RARVALSHSQ EQLMANAIFQ HSHDGSTDRG 600
  601 RKRRGSYNHE IERRKGAASR MGRPSLAKVG RSLSHSFEST QLKEDLDWTW VHPRGFEPRG 660
  661 MELVSSSERG TTPSFASYRE SNFFSPDPEC SVECSKLPSC SSSSSSSSPP RSSPGDPATR 720
  721 LGLLGTDRGN SQPALSSSSA RGQVASGLDY GGRIFVLHFD IGSFQHSFMI GRICMMALLD 780
  781 AISTYFALS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle