YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40742987, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.75
Transmembrane Helix	97	118	0.86
Non-Cytoplasmic	119	124	0.58
Transmembrane Helix	125	146	0.77
Cytoplasmic	147	204	0.59
Transmembrane Helix	205	226	0.87
Non-Cytoplasmic	227	233	0.63
Transmembrane Helix	234	252	0.90
Cytoplasmic	253	271	0.92
Transmembrane Helix	272	293	0.87
Non-Cytoplasmic	294	308	0.83
Transmembrane Helix	309	330	0.85
Cytoplasmic	331	340	0.80
Transmembrane Helix	341	366	0.80
Non-Cytoplasmic	367	419	0.97
Transmembrane Helix	420	441	0.94
Cytoplasmic	442	472	0.95
Transmembrane Helix	473	493	0.95
Non-Cytoplasmic	494	499	0.80
Transmembrane Helix	500	520	0.92
Cytoplasmic	521	535	0.66
Transmembrane Helix	536	556	0.45
Non-Cytoplasmic	557	583	0.62
Transmembrane Helix	584	607	0.81
Cytoplasmic	608	626	0.61
Transmembrane Helix	627	645	0.74
Non-Cytoplasmic	646	653	0.79
Transmembrane Helix	654	672	0.95
Cytoplasmic	673	683	0.75
Transmembrane Helix	684	708	0.78
Non-Cytoplasmic	709	733	0.62
Transmembrane Helix	734	757	0.89
Cytoplasmic	758	794	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDTPVRIT SANDSVPSDD APSAGLDTVE QLKHLKEHHH WDPNLPDEVV DEVNDALHAT  60
   61 DKDRRQSIVA SLLENSPYPE VRAAVPNIDE GGHSNTFRAW AIGMFLATVG SALNMLFSMR 120
  121 QPYIVIPSYV AQVVAYPIGV AWAKVMPHKT IRMFGMSVNL NPGPYSKKEH AIAVIMANAT 180
  181 FGGGAAYATD VLLAQRAFYK QRFDWAFEIF MCISTQMLGF GMAGFFHRFL VTPAAMIWPS 240
  241 TLINSALFTA LHDRSRPDPS KVSGWTIGRY RMFLYCLIGS FLWYWFPGYI APFLSVFAWV 300
  301 TWIKPNNVVI NQLFGGWTGL SLIPMTFDWT QISGFNFSPL IAPWHGIANT LLGMFIFFWV 360
  361 VTPALHYTGT HWAKYLPISD SNSYDNTGQV YNVTRILTPQ MTLDKAKYEA YSPLFLSTTF 420
  421 SLAYGLSFAT IIAVLIHAIL FHGKDIWVRF RQIGHEDEDV HARLMARFKP VPLWWYGAIT 480
  481 LIMIGMALGV TLGYPTNLSW WAFFIALIMG AVWFVPCGII QASTNIQIGL NVITEFVIGY 540
  541 MQPGRPMAMM LFKTYGYISM YQGLYFCQDM KLGHYMKIPP RVTFAAQMIS CLWSSIVQIC 600
  601 VMNWALGAIS SVCTLDQPNR YTCPNGRVFF NASIIWGTIG PARMFSPGQL YASLQWFWLA 660
  661 GAALPVAIYI AAKLLRNTKY ARYVRLLNAP IIFGGSSFIP PATPLNYLSW GIIGFIFNKW 720
  721 IRDRWRGWWM QYNYVLSAGL DVGLALCTIL IFLTLNLTNT EFPSWWGTNI AANTMDAAGT 780
  781 AVQVTEVKFG PESW