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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67903516, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVEQQRLGN KEASVPEMDS NSDMWAIDEK AEKKLIRKMD LYILPFVVLL YLFSFLDRVN  60
   61 IGNARLYGLE EDLGLVGDQY QVAVSILFVT YCLFEVPSNL VIKKLTPSRY IAAIAIIWGV 120
  121 IATLTGITQN YGGLIACRLL LGVVEAGLFP GLMTYLTLFY SKHEIALRTG YLFSSAALAG 180
  181 ACGGLLAYAI GFMDGVSGLK GWRWIMIIEG IPTVIIGIAT WFFLADDPET AYYLNAEERA 240
  241 LVVKCRSRHF GHTASAQKFH WADVKEGALD WRIYAFCIAQ FGVDTMLYGY STFLPTIIKG 300
  301 LGDWSVPEVQ ALTIPCYALG AVAYLIVAWF SDRTQRRGLF ICVFAAISVV GYGILISDSS 360
  361 SGVHYFGALL VALGLYVAVG LPLAWLPTTL PRYAKRTFAT GLQLTFGNVS GVMSPFLYKT 420
  421 EEGPRYVRGN AVTLALVGFA GIIYGIMWAY YLWKNKRREQ GFEDEKAAGK TDEEIEEMGD 480
  481 MSPRYRTSNY NPSVPESDGW NLYYHLGGYG PWIEKLDGPT QDIKPPAGCH VDQVHMMARH 540
  541 GERYPTKNAG SRHLDLLERI KEANVTLNGS LSFLNNWDYF TSTPEEDFDQ LTRTGPYSGM 600
  601 LGAFTTGTRL LTRYHHLLSS QSNFTFWASD CQRVIQTAQY FALGLLGLNW GDIGRAKLEI 660
  661 IPETFDRRAD TLTPGDTCLR YLEDTENGHD KGMNMLALFQ QSYAPAIAER LLFEQGNSAL 720
  721 RALTNMDIFS MQEMCGFETL VRGSSPWCDV FSREDWENFE YARDLVHYYR AGPGNPYAGA 780
  781 MGWLWLNATA GLLQEGPKAG PLFFSFVHDG DIAPFLEALD ILKDPKYDPE LPATYRADDR 840
  841 VWRTSSVLPM GGRIILERIT CSSIDSDRKP DEGTFIRVNI NDKIVPLPYC KTGPGLSCPL 900
  901 DEFNGHVGRR NLEVGNFGEI VTRMWDSCRA IYIYRPLWRR PVRGSRVHAN PTNSEARNPR 960
  961 RPPEETGPFG KRRNARYEQS RSRTRTGTPA KKENQNVAEF SRLFAQQQEQ EKSRNALPKS1020
 1021 ASSANLDNAR KQTEKVATEC ILYGYRNKDS EWKVIDKYER VSRGMICEDY PRIDPKTNVG1080
 1081 YSQLLSGGDV VIRANLSADA NRKSKRYAGG FHWIKVTFDS TEAADRAVFY SPQEIDGHLV1140
 1141 FCEIYHGQGP AEDVPIPVGS TQANRFMSSN KRTLSTSHST AFLQNKDKGR PSRATTLPRS1200
 1201 FAVNNLASIA DEEDFSFSQD TTSTASSATA TGIEQSLPST ASTSTATATL HQRHTPQEAT1260
 1261 AAPVSEFMTH VPTVRRTKLR PISEALPPAP TVTERVLRSI PILSWFTGDI VGDGPQLRED1320
 1321 GTFDYDKSNV YWRFWYMIDM VLGTDICGLR EES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle