YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148693640, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	26	0.90
Cytoplasmic	27	77	0.76
Transmembrane Helix	78	98	0.79
Non-Cytoplasmic	99	99	0.37
Transmembrane Helix	100	122	0.58
Cytoplasmic	123	133	0.46
Transmembrane Helix	134	160	0.84
Non-Cytoplasmic	161	166	0.44
Transmembrane Helix	167	188	0.92
Cytoplasmic	189	220	0.49
Transmembrane Helix	221	243	0.57
Non-Cytoplasmic	244	260	0.67
Transmembrane Helix	261	283	0.84
Cytoplasmic	284	301	0.72
Transmembrane Helix	302	322	0.93
Non-Cytoplasmic	323	328	0.73
Transmembrane Helix	329	352	0.92
Cytoplasmic	353	361	0.72
Transmembrane Helix	362	384	0.82
Non-Cytoplasmic	385	394	0.65
Transmembrane Helix	395	414	0.95
Cytoplasmic	415	429	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQGYGYYR TVIFAAMFGG YSLYYFNRKT FSFVMPSLVD EIALDKDDLG LITSSQSAAY  60
   61 AISKFVSGVL SDQMSARWLF SSGLLLVGLV NVVFSWSSTV SAFAALWFLN GLAQGLGWPP 120
  121 CGKILRKWFE PSQFGTWWAV LSTSMNLAGS LGPILATILA QSYSWRSTLA LSGALCVVVS 180
  181 FFCLLLIHNE PADVGLRNLD PAPSKGKKGS SKEESTLQDL LLSPYLWVLS TGYLVVFGVK 240
  241 TCCTDWGQFF LIQERGQSAL VGSSYISALE VGGLVGSIAA GYLSDRAMAK AGLSLYGNPR 300
  301 HGLLLLMMAG MAASMFLFRV TVTSDSPKIW ILVLGAVFGF SSYGPIALFG VIANESAPPN 360
  361 LCGTSHAIVG LMANVGGFLA GLPFSTIAKH YSWSTAFWVA EVVCGASTVV FFLLRNIRTK 420
  421 MGRVSKKGE