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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RER6_ARATH
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR  60
   61 TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT SPAESAAPPP PPATTTPSPP 120
  121 PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL 180
  181 EIVRNLRKRC VESERQISVA LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY 240
  241 EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR 300
  301 RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE 360
  361 YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP VADFLWYSAA RPCSRNCFDR 420
  421 AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER 480
  481 LLADPKFLNR LAIEEAISIT TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA 540
  541 PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG 600
  601 VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII 660
  661 AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID LARSTGLQTQ KSIPASKEIS 720
  721 EALEEPTVEC DTTTEEESID KLNNQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle