YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRO4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	27	0.90
Non-Cytoplasmic	28	54	0.89
Transmembrane Helix	55	75	0.96
Cytoplasmic	76	95	0.93
Transmembrane Helix	96	122	0.90
Non-Cytoplasmic	123	153	0.92
Transmembrane Helix	154	177	0.76
Cytoplasmic	178	192	0.75
Transmembrane Helix	193	217	0.89
Non-Cytoplasmic	218	229	0.92
Transmembrane Helix	230	251	0.89
Cytoplasmic	252	260	0.84
Transmembrane Helix	261	280	0.83
Non-Cytoplasmic	281	283	0.68
Transmembrane Helix	284	303	0.77
Cytoplasmic	304	525	0.84
Transmembrane Helix	526	548	0.93
Non-Cytoplasmic	549	568	0.90
Transmembrane Helix	569	590	0.93
Cytoplasmic	591	699	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNMRSLVKT LMVVLFLGWI LVWIMISTNL FKSKWTPKLS KYLNTTYFGP QGTNLVLLTV  60
   61 PMMFIAVLSC VYLHIQKKPT QPQREWKLKR IMGRVIMVMN PLGIVTATEL TFSLLFVALL 120
  121 AWSLYNYLYL SYHVHLHNDD NAKIWQAKFR AFGLRIGYVG NICWAFLFFP VTRASTILPL 180
  181 VGLTSESSIK YHIWLGHVSN FCFLVHTVVF LIYWAMINKL METFAWNPTY VPNLAGTIAM 240
  241 VIGIAMWVTS LPSFRRKKFE IFFYTHHLYG LYIVFYVIHV GDSWFCMILP NIFLFFIDRY 300
  301 LRFLQSTKRS RLVSARILPS DNLELTFSKT PGLHYTPTSI LFLHVPSISK IQWHPFTITS 360
  361 SSNLEKDTLS VVIRRQGSWT QKLYTHLSSS IDSLEVSTEG PYGPNSFDVS RHNSLILVSG 420
  421 GSGITPFISV IRELISQSQN KSTKLPDVLL VCSFKHYHDL AFLDLIFPLD MSASDISRLN 480
  481 LRIEAYITRE DKKPETTDDH RLLQTKWFKP QPLDSPISPV LGPNNFLWLG VVILSSFVMF 540
  541 LLLIGIVTRY YIYPVDHNTG SIYNFSYRGL WDMFLGSACI FISSSVVFLW RKKQNKEGDK 600
  601 EFKNQVQSVE FQTPTSSPGS WFHGHERELE SVPYQSIVQA TSVHFGSKPN LKKILLEAEG 660
  661 SEDVGVMVCG PRKMRHEVAK ICSSGLAKNL HFEAISFNW